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GEO accession:
Sample GSM120168
Query DataSets for GSM120168
Status
Public on Sep 30, 2007
Title
2001-12-27_M-5
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 5 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 5 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
-8.78E-05
0.999797761
FALSE
-8.78E-05
E. coli control
1.06027019
11.48868179
FALSE
1.06027019
empty
97.66780853
TRUE
1.989751458
Human Control
0.463337421
2.906279802
FALSE
0.463337421
Lambda Control
0.565147758
3.674072743
FALSE
0.565147758
n1
-0.02572104
0.94249481
FALSE
-0.02572104
n2
0.001043505
1.002405644
FALSE
0.001043505
p1
0.018790403
1.044216156
FALSE
0.018790403
p2
0.025088318
1.059469104
FALSE
0.025088318
Phi174 Control
100
TRUE
2
YAL001C
0.013770868
1.032216668
FALSE
0.013770868
YAL002W
0.054560754
1.133863449
FALSE
0.054560754
YAL003W
-0.006345719
0.985494673
FALSE
-0.006345719
YAL004W
-2
0.01
FALSE
-2
YAL005C
-0.438762993
0.364113689
FALSE
-0.438762993
YAL007C
0.006247009
1.01448822
FALSE
0.006247009
YAL008W
1.620781422
TRUE
0.209724456
YAL009W
0.173117086
1.489762664
FALSE
0.173117086
YAL010C
-0.181096926
0.659026802
FALSE
-0.181096926
YAL011W
0.001370052
1.003159642
FALSE
0.001370052
Total number of rows:
6228
Table truncated, full table size
305 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120168.gpr.gz
500.7 Kb
(ftp)
(http)
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