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GEO accession:
Sample GSM120167
Query DataSets for GSM120167
Status
Public on Sep 30, 2007
Title
2001-12-27_M-0
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 0 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 0 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
0.022853475
1.054031253
FALSE
0.022853475
E. coli control
0.177084655
1.503435016
FALSE
0.177084655
empty
95.22650909
TRUE
1.978757858
Human Control
0.260221601
1.820629597
FALSE
0.260221601
Lambda Control
60.4893837
TRUE
1.781679153
n1
0.012468749
1.029126525
FALSE
0.012468749
n2
-0.00794421
0.981874049
FALSE
-0.00794421
p1
0.022218341
1.05249083
FALSE
0.022218341
p2
0.02284169
1.054002643
FALSE
0.02284169
Phi174 Control
0.011805057
1.027554989
FALSE
0.011805057
YAL001C
-0.163344026
0.686524391
FALSE
-0.163344026
YAL002W
0.055769786
1.137024403
FALSE
0.055769786
YAL003W
-0.006277955
0.985648453
FALSE
-0.006277955
YAL004W
-1.955953002
0.011067435
FALSE
-1.955953002
YAL005C
-0.157161757
0.696367085
FALSE
-0.157161757
YAL007C
-0.136477143
0.730336249
FALSE
-0.136477143
YAL008W
0.104286268
1.271411896
FALSE
0.104286268
YAL009W
0.168175235
1.472906709
FALSE
0.168175235
YAL010C
-0.095735788
0.802165926
FALSE
-0.095735788
YAL011W
0.050497953
1.123305678
FALSE
0.050497953
Total number of rows:
6228
Table truncated, full table size
304 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120167.gpr.gz
506.6 Kb
(ftp)
(http)
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