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GEO accession:
Sample GSM120055
Query DataSets for GSM120055
Status
Public on Sep 30, 2007
Title
2001-08-16_2399-95
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 95 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 95 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 12, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
FLAG
UNF_VALUE
blank
-0.076078795
FALSE
-0.076078795
E. coli control
-0.233356506
FALSE
-0.233356506
empty
TRUE
0.099512771
Human Control
-0.370836645
FALSE
-0.370836645
Lambda Control
-0.437007994
FALSE
-0.437007994
n1
0.059924554
FALSE
0.059924554
n2
-0.024311427
FALSE
-0.024311427
p1
0.004752282
FALSE
0.004752282
p2
0.017379787
FALSE
0.017379787
Phi174 Control
TRUE
0.394382209
YAL001C
0.00794206
FALSE
0.00794206
YAL002W
-0.137208939
FALSE
-0.137208939
YAL003W
-0.034559175
FALSE
-0.034559175
YAL004W
-1.089937091
FALSE
-1.089937091
YAL005C
-0.026245032
FALSE
-0.026245032
YAL007C
0.172702536
FALSE
0.172702536
YAL008W
0.028599449
FALSE
0.028599449
YAL009W
0.140492678
FALSE
0.140492678
YAL010C
0.026798749
FALSE
0.026798749
YAL011W
-0.055221655
FALSE
-0.055221655
Total number of rows:
6228
Table truncated, full table size
229 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120055.gpr.gz
500.5 Kb
(ftp)
(http)
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