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GEO accession:
Sample GSM120040
Query DataSets for GSM120040
Status
Public on Sep 30, 2007
Title
2001-08-15_2399-20
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 20 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 20 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 12, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
FLAG
UNF_VALUE
blank
0.117047831
FALSE
0.117047831
E. coli control
-0.258468747
FALSE
-0.258468747
empty
TRUE
-0.102691837
Human Control
-0.230011985
FALSE
-0.230011985
Lambda Control
-0.212711185
FALSE
-0.212711185
n1
0.034712549
FALSE
0.034712549
n2
0.016920898
FALSE
0.016920898
p1
0.051843703
FALSE
0.051843703
p2
0.039330989
FALSE
0.039330989
Phi174 Control
TRUE
-0.698864758
YAL001C
0.103879772
FALSE
0.103879772
YAL002W
-0.005357917
FALSE
-0.005357917
YAL003W
-0.067424759
FALSE
-0.067424759
YAL004W
0.018879246
FALSE
0.018879246
YAL005C
0.04035097
FALSE
0.04035097
YAL007C
0.230874166
FALSE
0.230874166
YAL008W
0.017325439
FALSE
0.017325439
YAL009W
0.00815429
FALSE
0.00815429
YAL010C
-0.001872506
FALSE
-0.001872506
YAL011W
0.03820036
FALSE
0.03820036
Total number of rows:
6228
Table truncated, full table size
228 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120040.gpr.gz
501.3 Kb
(ftp)
(http)
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