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Sample GSM118475 Query DataSets for GSM118475
Status Public on Aug 31, 2006
Title Yeast yox1yhp1 mutant cell cycle-time point 120 min 2001-04-12_2665-120
Sample type RNA
 
Channel 1
Source name Yeast yox1yhp1 mutant cell cycle-time point 120 min
Organism Saccharomyces cerevisiae
Characteristics Yeast yox1yhp1 mutant cell cycle-time point 120 min
Treatment protocol Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast (wild type) asynchronous culture
Organism Saccharomyces cerevisiae
Characteristics Yeast (wild type) asynchronous culture
Treatment protocol Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule total RNA
Label Cy3
 
 
Description Yeast yox1yhp1 mutant cell cycle
Data processing log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
 
Submission date Jul 05, 2006
Last update date Jul 11, 2006
Contact name Tata Pramila
E-mail(s) [email protected]
Phone (206)6674483
Organization name FHCRC
Department Basic Sciences
Lab Breeden Lab
Street address 1100, Fairview Avenue N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL1914
Series (1)
GSE5283 Yeast W303 yox1yhp1 mutant cell cycle

Data table header descriptions
ID_REF Array identifier
VALUE same as UNF_VALUE but with flagged values removed
Ratio
Flagged? FALSE for good spot and TRUE for bad spot
UNF_VALUE Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]

Data table
ID_REF VALUE Ratio Flagged? UNF_VALUE
blank -0.046498101 0.898466528 FALSE -0.046498101
E. coli control 0.114748389 1.302412033 FALSE 0.114748389
empty 16.93348312 TRUE 1.228746295
Human Control 0.082377605 1.208864451 FALSE 0.082377605
Lambda Control -0.032175668 0.928590715 FALSE -0.032175668
n1 0.005816107 1.013482213 FALSE 0.005816107
n2 -0.013372276 0.969678402 FALSE -0.013372276
p1 -0.008838497 0.979854286 FALSE -0.008838497
p2 -0.016281772 0.963203907 FALSE -0.016281772
Phi174 Control 0.164451584 1.460331917 FALSE 0.164451584
YAL001C 0.079742454 1.201551676 FALSE 0.079742454
YAL002W 0.110755861 1.290493608 FALSE 0.110755861
YAL003W -0.032700393 0.927469432 FALSE -0.032700393
YAL004W -0.12017642 0.758269489 FALSE -0.12017642
YAL005C -0.017638886 0.9601987 FALSE -0.017638886
YAL007C -0.053676039 0.883738875 FALSE -0.053676039
YAL008W -0.019124167 0.956920445 FALSE -0.019124167
YAL009W 0.057242733 1.14088726 FALSE 0.057242733
YAL010C 0.024025433 1.056879401 FALSE 0.024025433
YAL011W 0.024257319 1.057443857 FALSE 0.024257319

Total number of rows: 6228

Table truncated, full table size 306 Kbytes.




Supplementary file Size Download File type/resource
GSM118475.gpr.gz 482.7 Kb (ftp)(http) GPR

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