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Sample GSM118474 Query DataSets for GSM118474
Status Public on Aug 31, 2006
Title Yeast yox1yhp1 mutant cell cycle-time point 110 min 2001-04-12_2665-110
Sample type RNA
 
Channel 1
Source name Yeast yox1yhp1 mutant cell cycle-time point 110 min
Organism Saccharomyces cerevisiae
Characteristics Yeast yox1yhp1 mutant cell cycle-time point 110 min
Treatment protocol Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast (wild type) asynchronous culture
Organism Saccharomyces cerevisiae
Characteristics Yeast (wild type) asynchronous culture
Treatment protocol Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule total RNA
Label Cy3
 
 
Description Yeast yox1yhp1 mutant cell cycle
Data processing log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
 
Submission date Jul 05, 2006
Last update date Jul 11, 2006
Contact name Tata Pramila
E-mail(s) [email protected]
Phone (206)6674483
Organization name FHCRC
Department Basic Sciences
Lab Breeden Lab
Street address 1100, Fairview Avenue N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL1914
Series (1)
GSE5283 Yeast W303 yox1yhp1 mutant cell cycle

Data table header descriptions
ID_REF Array identifier
VALUE same as UNF_VALUE but with flagged values removed
Ratio
Flagged? FALSE for good spot and TRUE for bad spot
UNF_VALUE Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]

Data table
ID_REF VALUE Ratio Flagged? UNF_VALUE
blank 0.009586244 1.022318602 FALSE 0.009586244
E. coli control 0.214422345 1.638409019 FALSE 0.214422345
empty 1.17231524 TRUE 0.069044426
Human Control 0.148177803 1.406623244 FALSE 0.148177803
Lambda Control 0.18568702 1.5335114 FALSE 0.18568702
n1 0.016254483 1.038136601 FALSE 0.016254483
n2 0.006229014 1.014446139 FALSE 0.006229014
p1 0.007741175 1.01798451 FALSE 0.007741175
p2 0.0273153 1.064915896 FALSE 0.0273153
Phi174 Control 0.204278752 1.600584984 FALSE 0.204278752
YAL001C 0.092689961 1.237912536 FALSE 0.092689961
YAL002W 0.012007718 1.028034568 FALSE 0.012007718
YAL003W -0.036907788 0.918527603 FALSE -0.036907788
YAL004W -0.260915965 0.548383057 FALSE -0.260915965
YAL005C -0.03043972 0.932309866 FALSE -0.03043972
YAL007C 0.029740444 1.070879102 FALSE 0.029740444
YAL008W 0.025227396 1.059808493 FALSE 0.025227396
YAL009W 0.083150968 1.211019039 FALSE 0.083150968
YAL010C 0.066755384 1.166152597 FALSE 0.066755384
YAL011W 0.064778484 1.160856366 FALSE 0.064778484

Total number of rows: 6228

Table truncated, full table size 306 Kbytes.




Supplementary file Size Download File type/resource
GSM118474.gpr.gz 487.6 Kb (ftp)(http) GPR

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