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Sample GSM118469 Query DataSets for GSM118469
Status Public on Aug 31, 2006
Title Yeast yox1yhp1 mutant cell cycle-time point 60 min 2001-04-12_2665-60
Sample type RNA
 
Channel 1
Source name Yeast yox1yhp1 mutant cell cycle-time point 60 min
Organism Saccharomyces cerevisiae
Characteristics Yeast yox1yhp1 mutant cell cycle-time point 60 min
Treatment protocol Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast (wild type) asynchronous culture
Organism Saccharomyces cerevisiae
Characteristics Yeast (wild type) asynchronous culture
Treatment protocol Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule total RNA
Label Cy3
 
 
Description Yeast yox1yhp1 mutant cell cycle
Data processing log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
 
Submission date Jul 05, 2006
Last update date Jul 11, 2006
Contact name Tata Pramila
E-mail(s) [email protected]
Phone (206)6674483
Organization name FHCRC
Department Basic Sciences
Lab Breeden Lab
Street address 1100, Fairview Avenue N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL1914
Series (1)
GSE5283 Yeast W303 yox1yhp1 mutant cell cycle

Data table header descriptions
ID_REF Array identifier
VALUE same as UNF_VALUE but with flagged values removed
Ratio
Flagged? FALSE for good spot and TRUE for bad spot
UNF_VALUE Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]

Data table
ID_REF VALUE Ratio Flagged? UNF_VALUE
blank 0.016377231 1.038429976 FALSE 0.016377231
E. coli control 0.094582811 1.243319631 FALSE 0.094582811
empty 1.12885654 TRUE 0.052638773
Human Control 0.038978785 1.093902946 FALSE 0.038978785
Lambda Control 0.093039565 1.238909483 FALSE 0.093039565
n1 0.066209629 1.16468811 FALSE 0.066209629
n2 0.004462666 1.010328651 FALSE 0.004462666
p1 0.002311582 1.005336762 FALSE 0.002311582
p2 -0.028867714 0.935690641 FALSE -0.028867714
Phi174 Control 0.109810539 1.287687659 FALSE 0.109810539
YAL001C 0.126505926 1.338153482 FALSE 0.126505926
YAL002W 0.05109458 1.124849916 FALSE 0.05109458
YAL003W -0.070354298 0.850443959 FALSE -0.070354298
YAL004W -0.039805498 0.912419379 FALSE -0.039805498
YAL005C 0.071275659 1.178353667 FALSE 0.071275659
YAL007C -0.124257639 0.751177132 FALSE -0.124257639
YAL008W -0.054304883 0.882460177 FALSE -0.054304883
YAL009W 0.019976568 1.047072053 FALSE 0.019976568
YAL010C 0.039105564 1.094222307 FALSE 0.039105564
YAL011W 0.027981324 1.066550255 FALSE 0.027981324

Total number of rows: 6228

Table truncated, full table size 306 Kbytes.




Supplementary file Size Download File type/resource
GSM118469.gpr.gz 481.5 Kb (ftp)(http) GPR

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