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Sample GSM1179037 Query DataSets for GSM1179037
Status Public on Aug 08, 2013
Title liver, S, A1359-63
Sample type RNA
 
Source name Steatosis
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Steatosis
fat: 30
inflammation: 0
other_id: NA
bariatric surgery: NA
Sex: female
age: 32
bmi: 60.2
nas: 1
fibrosis: 0
lar: 5.5183011
delta lar: NA
delta leptin: NA
leptin: 31.962
adiponectin: 5.792
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 1.907726898
7892502 3.141447074
7892503 2.77478079
7892504 6.798151493
7892505 2.218665876
7892506 3.7099279
7892507 3.737807529
7892508 3.624553079
7892509 8.709740016
7892510 4.015797552
7892511 3.245126638
7892512 4.410050521
7892513 2.863565541
7892514 10.03669131
7892515 7.254929451
7892516 4.179476284
7892517 5.240284104
7892518 2.997047833
7892519 3.016778782
7892520 7.255687859

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1179037_A1359-63.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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