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Sample GSM1178985 Query DataSets for GSM1178985
Status Public on Aug 08, 2013
Title liver, H, A1359-16
Sample type RNA
 
Source name Healthy obese
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Healthy obese
fat: 0
inflammation: 0
other_id: NA
bariatric surgery: NA
Sex: female
age: 46
bmi: 48
nas: 0
fibrosis: 0
lar: 4.5361643
delta lar: NA
delta leptin: NA
leptin: 26.278
adiponectin: 5.793
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 3.785240261
7892502 2.948826847
7892503 3.641228387
7892504 6.998182484
7892505 1.781025753
7892506 4.672882663
7892507 4.211305888
7892508 4.701306826
7892509 8.986624702
7892510 3.174546727
7892511 3.16746961
7892512 4.474144106
7892513 1.996160214
7892514 10.35538862
7892515 7.58147291
7892516 3.433266546
7892517 4.842715486
7892518 2.439886935
7892519 2.267372243
7892520 7.14032093

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1178985_A1359-16.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table
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