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Sample GSM1178973 Query DataSets for GSM1178973
Status Public on Aug 08, 2013
Title liver, C, A1359-04
Sample type RNA
 
Source name Control
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Control
fat: 0
inflammation: 0
other_id: NA
bariatric surgery: NA
Sex: male
age: 23
bmi: 26.6
nas: 0
fibrosis: 0
lar: 2.0398703
delta lar: NA
delta leptin: NA
leptin: 21.386
adiponectin: 10.484
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 2.225883016
7892502 3.483997536
7892503 3.654358412
7892504 7.377780986
7892505 1.713928001
7892506 4.547583113
7892507 4.184816069
7892508 5.077103707
7892509 8.503512611
7892510 3.346264468
7892511 3.293691852
7892512 4.986918264
7892513 2.300449099
7892514 9.874417081
7892515 8.260470656
7892516 2.756853213
7892517 5.240612513
7892518 2.640817962
7892519 2.889258776
7892520 7.872318596

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1178973_A1359-04.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table
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