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Sample GSM1167315 Query DataSets for GSM1167315
Status Public on Jun 19, 2013
Title blood-schizophrenia case sample 57
Sample type RNA
 
Source name lymphocytes
Organism Homo sapiens
Characteristics gender: MALE
affection status: CASE
condition: schizophrenia
cell type: lymphocyte
Extracted molecule total RNA
Extraction protocol The isolated RNAs were amplified and labelled using the Illumina TotalPrep RNA Amplification kit (Ambion)
Label biotin
Label protocol The isolated RNAs were amplified and labelled using the Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol RNA was hybridized to the Illumina Whole-Genome Expression Beadchips (HT12-v4), using the standard Illumina Hybridization Protocol.
Scan protocol Standard Illumina scanning protocol, using iScan.
Description RNA analysis in Finnish Schizophrenia Families
SAMPLE 57
Data processing Missing intensities were removed, raw intensites were quantile normalized and log2 transformed. Poorly variable probe sets were removed by utilising their inter-quantile range (IQR), cut-off value of 0.7 .
 
Submission date Jun 18, 2013
Last update date Jun 20, 2013
Contact name William Hennah
E-mail(s) [email protected]
Organization name Institute for Molecular Medicine Finland, FIMM
Street address FIMM, PO Box 20
City Helsinki
ZIP/Postal code FI-00014
Country Finland
 
Platform ID GPL10558
Series (1)
GSE48072 RNA analysis in Finnish Schizophrenia Families

Data table header descriptions
ID_REF
VALUE quantile normalized, and log2 transformed signals that passed the stringent QC as described in the data processing section

Data table
ID_REF VALUE
ILMN_1766054 10.14173279
ILMN_1743205 8.525030752
ILMN_1677814 8.290972158
ILMN_1706531 6.418339467
ILMN_1676846 7.522055987
ILMN_1810085 7.513150953
ILMN_2318685 7.230922907
ILMN_2245305 8.001884962
ILMN_1801767 7.618516762
ILMN_1655702 7.145709101
ILMN_1785424 9.535419721
ILMN_1731610 6.996064283
ILMN_2396672 8.316491363
ILMN_1660199 7.166951238
ILMN_2331636 6.356141142
ILMN_1775579 6.732322654
ILMN_2263466 6.108248817
ILMN_1808395 10.01801678
ILMN_3187680 7.895206214
ILMN_1716480 7.008090723

Total number of rows: 2839

Table truncated, full table size 68 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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