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Sample GSM1167314 Query DataSets for GSM1167314
Status Public on Jun 19, 2013
Title blood-schizophrenia control sample 56
Sample type RNA
 
Source name lymphocytes
Organism Homo sapiens
Characteristics gender: MALE
affection status: CONTROL
condition: n/a
cell type: lymphocyte
Extracted molecule total RNA
Extraction protocol The isolated RNAs were amplified and labelled using the Illumina TotalPrep RNA Amplification kit (Ambion)
Label biotin
Label protocol The isolated RNAs were amplified and labelled using the Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol RNA was hybridized to the Illumina Whole-Genome Expression Beadchips (HT12-v4), using the standard Illumina Hybridization Protocol.
Scan protocol Standard Illumina scanning protocol, using iScan.
Description RNA analysis in Finnish Schizophrenia Families
SAMPLE 56
Data processing Missing intensities were removed, raw intensites were quantile normalized and log2 transformed. Poorly variable probe sets were removed by utilising their inter-quantile range (IQR), cut-off value of 0.7 .
 
Submission date Jun 18, 2013
Last update date Jun 20, 2013
Contact name William Hennah
E-mail(s) [email protected]
Organization name Institute for Molecular Medicine Finland, FIMM
Street address FIMM, PO Box 20
City Helsinki
ZIP/Postal code FI-00014
Country Finland
 
Platform ID GPL10558
Series (1)
GSE48072 RNA analysis in Finnish Schizophrenia Families

Data table header descriptions
ID_REF
VALUE quantile normalized, and log2 transformed signals that passed the stringent QC as described in the data processing section

Data table
ID_REF VALUE
ILMN_1766054 5.246644164
ILMN_1743205 9.042950827
ILMN_1677814 7.809111844
ILMN_1706531 7.268833306
ILMN_1676846 7.351753058
ILMN_1810085 6.712976096
ILMN_2318685 6.547170301
ILMN_2245305 6.826366478
ILMN_1801767 7.784394922
ILMN_1655702 5.941492279
ILMN_1785424 11.01452944
ILMN_1731610 7.483340052
ILMN_2396672 9.56598944
ILMN_1660199 7.778413689
ILMN_2331636 6.272826273
ILMN_1775579 7.390423684
ILMN_2263466 6.898844118
ILMN_1808395 10.34953138
ILMN_3187680 7.533716712
ILMN_1716480 7.595438898

Total number of rows: 2839

Table truncated, full table size 68 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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