NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM115688 Query DataSets for GSM115688
Status Public on Sep 01, 2006
Title LiverTissue_GavageTreatment_CornOil_Control_Animal24
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 2.599
OD280: 1.354
Ratio: 1.93
Dilution: 10
RNA Integrity Number: 7.4
Bioanalyzer Results: Okay
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 24
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Corn Oil, Treatment Repeat: 1, Units of Treatment Repeat: day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Route of Exposure: Gavage, Dose or Concentration: 5, Units of Dose or Concentration: ml/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, gavage treatment, 13 weeks, 5 days per week, corn oil vehicle control
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.318982659
1415671_at 9.250415064
1415672_at 9.652798532
1415673_at 6.190587334
1415674_a_at 7.574159851
1415675_at 7.307165206
1415676_a_at 10.0509209
1415677_at 9.719498312
1415678_at 9.928881885
1415679_at 9.862001955
1415680_at 7.477764581
1415681_at 8.615332427
1415682_at 6.760071556
1415683_at 9.726825357
1415684_at 8.778841541
1415685_at 7.683270789
1415686_at 8.729578883
1415687_a_at 10.48695988
1415688_at 9.149545388
1415689_s_at 5.815481993

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115688.CEL.gz 5.8 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap