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Sample GSM115684 Query DataSets for GSM115684
Status Public on Sep 01, 2006
Title LiverTissue_FeedTreatment_Pentachloronitrobenzene_Animal16
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 9.793
OD280: 5.08
Ratio: 1.94
Dilution: 10
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 16
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Pentachloronitrobenzene, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet, Dose or Concentration: 8187, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, feed treatment, 13 weeks, 7 days per week, pentachloronitrobenzene, 8187 ppm
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.245443062
1415671_at 9.378273477
1415672_at 9.725349473
1415673_at 6.009735107
1415674_a_at 7.766758556
1415675_at 7.269577658
1415676_a_at 10.3443069
1415677_at 9.788345937
1415678_at 9.862001384
1415679_at 9.861685111
1415680_at 7.59067364
1415681_at 8.963387981
1415682_at 6.889740941
1415683_at 9.747890315
1415684_at 9.071604406
1415685_at 8.119900216
1415686_at 8.866713675
1415687_a_at 10.65657157
1415688_at 9.201267402
1415689_s_at 6.358334284

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115684.CEL.gz 5.8 Mb (ftp)(http) CEL

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