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Sample GSM115674 Query DataSets for GSM115674
Status Public on Sep 01, 2006
Title LungTissue_GavageTreatment_2,3-Benzofuran_Animal10
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 1.52
OD280: 0.829
Ratio: 1.8
RNA Integrity Number: 8.9
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 10
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 2,3-Benzofuran, Treatment Repeat: 1, Units of Treatment Repeat: day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Corn oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 240, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description lung tissue, right lobe, gavage treatment, 13 weeks, 5 days per week, 2,3-benzofuran, 240 mg per kg
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5127 Gene Expression Biomarkers for Predicting Lung Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.886865557
1415671_at 10.48615602
1415672_at 10.81014518
1415673_at 8.124064675
1415674_a_at 10.05753383
1415675_at 8.94298477
1415676_a_at 10.9649626
1415677_at 9.195348681
1415678_at 10.39414985
1415679_at 11.69584866
1415680_at 8.424634984
1415681_at 9.486594676
1415682_at 7.604239681
1415683_at 10.20545249
1415684_at 8.935509427
1415685_at 7.7762353
1415686_at 9.999917461
1415687_a_at 11.28787056
1415688_at 9.775554546
1415689_s_at 7.946577746

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115674.CEL.gz 5.9 Mb (ftp)(http) CEL

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