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Sample GSM115666 Query DataSets for GSM115666
Status Public on Sep 01, 2006
Title LungTissue_FeedTreatment_Rodent Chow_Control_Animal28
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 0.479
OD280: 0.145
Ratio: 2.22
RNA Integrity Number: 8.7
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 28
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, [email protected], 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Rodent Chow, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description lung tissue, right lobe, feed treatment, 13 weeks, 7 days per week, rodent chow control
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) [email protected]
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5127 Gene Expression Biomarkers for Predicting Lung Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.903275221
1415671_at 9.988387898
1415672_at 10.45253819
1415673_at 7.265989924
1415674_a_at 9.287689962
1415675_at 8.180993655
1415676_a_at 10.50701937
1415677_at 8.497453151
1415678_at 10.12216436
1415679_at 10.86257877
1415680_at 8.694131642
1415681_at 8.928925986
1415682_at 7.607120143
1415683_at 9.96831118
1415684_at 8.536753408
1415685_at 7.956361742
1415686_at 9.982762905
1415687_a_at 11.79379413
1415688_at 9.68246858
1415689_s_at 7.405092056

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115666.CEL.gz 5.9 Mb (ftp)(http) CEL

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