|
| Status |
Public on Aug 30, 2006 |
| Title |
Diffuse large B-cell lymphoma VUMC_L53_b32_s40 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
lymph node
|
| Organism |
Homo sapiens |
| Characteristics |
Diffuse large B-cell lymphoma
Gender: female
|
| Biomaterial provider |
VUMC, Amsterdam, The Netherlands
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA isolation protocol available via the VUMC MACF website
Also described in Van den IJssel et al, Nucleic Acids Res. 2005 Dec 16;33(22):e192
|
| Label |
Cy3
|
| Label protocol |
DNA labeling protocol available via the VUMC MACF website
Also described in Van den IJssel et al, Nucleic Acids Res. 2005 Dec 16;33(22):e192
|
| |
|
| Channel 2 |
| Source name |
Male reference DNA
|
| Organism |
Homo sapiens |
| Characteristics |
Pooled DNA from the blood of 10 normal individuals
Gender: male
|
| Biomaterial provider |
VUMC, Amsterdam, The Netherlands
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAzol (Invitrogen) according to manufacturer's protocol
|
| Label |
Cy5
|
| Label protocol |
DNA labeling protocol available via the VUMC MACF website
Also described in Van den IJssel et al, Nucleic Acids Res. 2005 Dec 16;33(22):e192
|
| |
|
| |
| Hybridization protocol |
Hybridization protocol available via the VUMC MACF website
Also described in Van den IJssel et al, Nucleic Acids Res. 2005 Dec 16;33(22):e192
|
| Scan protocol |
Microarray Scanner G2505B (Agilent Technologies), default settings
|
| Description |
protocols available via the VUMC MACF website
|
| Data processing |
Using ImaGene as described in Carvalho et al (2004) J.Clin.Path., vol. 57, 644-646. Normalization was done to the mode value of the log2ratio's.
|
| |
|
| Submission date |
Jun 20, 2006 |
| Last update date |
Aug 30, 2006 |
| Contact name |
Daoud Sie |
| E-mail(s) |
[email protected]
|
| Phone |
+31 20 4442428
|
| Organization name |
Vrije Universiteit Medical Center
|
| Department |
Pathology
|
| Lab |
Microarray Core Facility
|
| Street address |
De Boelelaan 1117
|
| City |
Amsterdam |
| ZIP/Postal code |
1081 HV |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL3443 |
| Series (1) |
| GSE5051 |
Cross-Platform Array Comparative Genomic Hybridization (array CGH) Meta-Analysis |
|
