NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM114751 Query DataSets for GSM114751
Status Public on Jul 04, 2008
Title Pineal Culture CT18 NE vs. Vehicle (Dye-Swap) Replicate 3
Sample type RNA
 
Channel 1
Source name Chick pinealocytes; 18 hours after beginning of subjective day with 6-hour NE administration
Organism Gallus gallus
Characteristics Strain: WL-36
Gender: Male
Developmental Age: P1
Tissue of origin: Pineal gland
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name Chick pinealocytes; 18 hours after beginning of subjective day with 6-hour vehicle administration
Organism Gallus gallus
Characteristics Strain: WL-36
Gender: Male
Developmental Age: P1
Tissue of origin: Pineal gland
Extracted molecule total RNA
Label Cy5
 
 
Description Pineal Culture CT18 NE vs. Vehicle (Dye-Swap) Replicate 3
Data processing GenePixPro was used to generate a .gpr file, which was analyzed using GeneSpring software. Data were then subjected to LOWESS and dye-swap normalizations, and each time-point was reported as the normalized ratio of Cy3 to Cy5 intensity.
 
Submission date Jun 15, 2006
Last update date Jul 05, 2007
Contact name Phillip D. Beremand
E-mail(s) [email protected]
Phone 979-845-0663
Fax 979-847-8805
Organization name Texas A&M University
Department Biology
Lab Laboratory for Functional Genomics
Street address
City College Station
State/province TX
ZIP/Postal code 77843-3258
Country USA
 
Platform ID GPL3731
Series (1)
GSE5292 Circadian Transcriptome of the Chicken Pineal In Vitro

Data table header descriptions
ID_REF
VALUE Natural logarithm of ratio of cy3 to cy5

Data table
ID_REF VALUE
1 0.70910891163721
2 1.11514165619309
3 1.1495395960906
4 1.74777421297774
5 1.07568669398165
6 null
7 1.40030441045012
8 4.17899234256105
9 1.11090926992281
10 1.42719443259206
11 1.4938703707575
12 1.85391750300251
13 -0.0152663093622336
14 -0.0575723347875233
15 -0.146633190422872
16 -0.590168118312634
17 -0.140089950163832
18 0.300525763004826
19 0.0987128387342461
20 -0.791266797138575

Total number of rows: 8084

Table truncated, full table size 183 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap