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Sample GSM114588 Query DataSets for GSM114588
Status Public on Jul 04, 2008
Title Pineal Culture CT18 Light Pulse vs. Control Replicate 6
Sample type RNA
 
Channel 1
Source name Chick pinealocytes; 18 hours after beginning of subjective day with 6-hour light pulse
Organism Gallus gallus
Characteristics Strain: WL-36
Gender: Male
Developmental Age: P1
Tissue of origin: Pineal gland
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Chick pinealocytes; 18 hours after beginning of subjective day with no light pulse
Organism Gallus gallus
Characteristics Strain: WL-36
Gender: Male
Developmental Age: P1
Tissue of origin: Pineal gland
Extracted molecule total RNA
Label Cy3
 
 
Description Pineal Culture CT18 Light Pulse vs. Control Replicate 6
Data processing GenePixPro was used to generate a .gpr file, which was analyzed using GeneSpring software. Data were then subjected to LOWESS normalization, and each time-point was reported as the normalized ratio of Cy5 to Cy3 intensity.
 
Submission date Jun 14, 2006
Last update date Jul 05, 2007
Contact name Phillip D. Beremand
E-mail(s) [email protected]
Phone 979-845-0663
Fax 979-847-8805
Organization name Texas A&M University
Department Biology
Lab Laboratory for Functional Genomics
Street address
City College Station
State/province TX
ZIP/Postal code 77843-3258
Country USA
 
Platform ID GPL3731
Series (1)
GSE5292 Circadian Transcriptome of the Chicken Pineal In Vitro

Data table header descriptions
ID_REF
VALUE Natural logarithm of ratio of cy5 to cy3

Data table
ID_REF VALUE
1 -2.83501193555262
2 0.0369432177823137
3 0.582504516665447
4 0.444958989075926
5 -0.379118059973284
6 0.470003629245736
7 -0.433890354566894
8 -0.381719866082827
9 -0.337777417999987
10 0.153183555170077
11 -0.0820041124709195
12 0.1392445911808
13 -0.286779280091466
14 1.15565056566229
15 -1.14891312833339
16 0.0758436578366024
17 0.605803057307327
18 -1.21718118553254
19 0.239760324849506
20 -0.135668611994535

Total number of rows: 8084

Table truncated, full table size 184 Kbytes.




Supplementary data files not provided

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