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| Status |
Public on Nov 27, 2006 |
| Title |
Yeast gcr1 null mutant in galactose rep1 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
yeast, 3% galactose
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
gcr1 null mutant, S288C background, grown to early/mid log in YEP containing indicated carbon source
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
yeast, 3% galactose
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
wild type strain, S288C background, grown to early/mid log in YEP containing indicated carbon source
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| |
| Description |
labeling done with Agilent's Low RNA Input Linear Amp kit; hyb and slide processing done according to Agilent's instructions
|
| Data processing |
log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
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| |
|
| Submission date |
Jun 08, 2006 |
| Last update date |
Nov 27, 2006 |
| Contact name |
Kellie Barbara |
| E-mail(s) |
[email protected]
|
| Organization name |
Univ. of Southern MS
|
| Department |
Biological Sciences
|
| Lab |
Santangelo Lab
|
| Street address |
118 College Dr. #5018
|
| City |
Hattiesburg |
| State/province |
MS |
| ZIP/Postal code |
39406 |
| Country |
USA |
| |
|
| Platform ID |
GPL2883 |
| Series (1) |
| GSE5027 |
Transcriptome response to gcr1 deletion in raffinose, galactose, and glucose |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
ratio-based and LOWESS normalized log2 ratio |
| F635 Mean - B635 |
channel 1 mean minus background |
| F532 Mean - B532 |
channel 2 mean minus background |
| Data table |
| ID_REF |
VALUE |
F635 Mean - B635 |
F532 Mean - B532 |
| 1 |
-9.214 |
8 |
4122 |
| 2 |
-2.5 |
3 |
15 |
| 3 |
0.106 |
283 |
220 |
| 4 |
0.774 |
168 |
80 |
| 5 |
0.665 |
277 |
140 |
| 6 |
-1.641 |
7 |
18 |
| 7 |
0.866 |
229 |
96 |
| 8 |
-1 |
21 |
35 |
| 9 |
-0.181 |
138 |
134 |
| 10 |
-0.118 |
435 |
377 |
| 11 |
0.47 |
263 |
156 |
| 12 |
0.962 |
692 |
297 |
| 13 |
-0.023 |
38 |
30 |
| 14 |
0.961 |
5213 |
2183 |
| 15 |
-2.044 |
4 |
16 |
| 16 |
0.72 |
598 |
296 |
| 17 |
-2.25 |
12 |
51 |
| 18 |
-0.068 |
1003 |
857 |
| 19 |
-1.725 |
282 |
792 |
| 20 |
-1.863 |
6 |
18 |
Total number of rows: 10807
Table truncated, full table size 195 Kbytes.
| Supplementary data files not provided |
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