NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM113345 Query DataSets for GSM113345
Status Public on Nov 03, 2006
Title mating responsive genes 21
Sample type RNA
 
Source name female lower reproductive tract
Organism Drosophila melanogaster
Characteristics Females from this sample were mated then dissected 24hrs postmating.
Treatment protocol Females were all same aged (3 days old) and either mated or not. Mated females were dissected at the following timeepoints: 0, 3, 6, 24 hrs postmating. Unmated (control) females were dissected at times interspersed with dissections of mated females.
Growth protocol 12 hr light/dark cycle 23C + or - 2C holding and culturing regimes
Extracted molecule total RNA
Extraction protocol TRIzol - chloroform
Label Biotin (Enzo RNA transcript Labeling Kit)
 
Description Three-day-old mated and unmated females were dissected to remove the lower reproductive tract (upper uterus, sperm-storage organs, and accessory glands). Mated females were dissected either immediately following mating (0 hr) or at 3, 6, or 24 hrs following the termination of mating. Tracts of 12-40 females of like category were pooled and total RNA extracted via a TRIzol-based protocol. Processing and labeling of transcript was performed by the Molecular Biology Core Facility at the Medical College of Georgia. Arrays from mated females at the different timepoints were compared to unmated females. This sample is also known as "564.48" and "24hrUGA48.CEL". keywords: reproduction, reproductive tract, accessory gland proteins, sperm
Data processing RMA (Irizarry 2003), probe-based linear model (Chu et al 2002)
 
Submission date Jun 07, 2006
Last update date Nov 03, 2006
Contact name Paul Mack
E-mail(s) [email protected]
Phone 706 542-1578
Fax 706 542-3910
Organization name University of Georgia
Department Genetics
Lab Bender
Street address 1057 Green St.
City Athens
State/province GA
ZIP/Postal code 30602-7223
Country USA
 
Platform ID GPL72
Series (1)
GSE5012 mating response genes

Data table header descriptions
ID_REF
VALUE raw signal - measure of transcript abundance utilizing input from entire probeset for each gene
ABS_CALL Statistical estimation of presence (P), absence (A), or marginal (M) based on entire probeset input
DETECTION P-VALUE p-value indicating significance level of the detection call (note that p-values for "A" calls are > 0.06, "M" calls in range 0.04 - 0.06)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 9.2 A 0.672921
AFFX-MurIL10_at 51.9 A 0.340661
AFFX-MurIL4_at 17 A 0.5
AFFX-MurFAS_at 1.5 A 0.9273
AFFX-BioB-5_at 477.7 P 0.002556
AFFX-BioB-M_at 463.2 P 0.00034
AFFX-BioB-3_at 221.7 P 0.004998
AFFX-BioC-5_at 701.5 P 0.000754
AFFX-BioC-3_at 777.9 P 0.000972
AFFX-BioDn-5_at 602.4 P 0.000052
AFFX-BioDn-3_at 4171.3 P 0.000195
AFFX-CreX-5_at 8592.4 P 0.000044
AFFX-CreX-3_at 13457.4 P 0.000044
AFFX-DapX-5_at 20.3 A 0.52976
AFFX-DapX-M_at 48.2 A 0.102165
AFFX-DapX-3_at 2.8 A 0.963431
AFFX-LysX-5_at 10.5 A 0.51489
AFFX-LysX-M_at 9.2 A 0.749204
AFFX-LysX-3_at 9.2 A 0.455413
AFFX-PheX-5_at 1.9 A 0.957038

Total number of rows: 14010

Table truncated, full table size 355 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap