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Sample GSM112952 Query DataSets for GSM112952
Status Public on Nov 03, 2006
Title mating responsive genes 11
Sample type RNA
 
Source name female lower reproductive tract
Organism Drosophila melanogaster
Characteristics Females from this sample were mated then dissected immediately following mating.
Treatment protocol Females were all same aged (3 days old) and either mated or not. Mated females were dissected at the following timeepoints: 0, 3, 6, 24 hrs postmating. Unmated (control) females were dissected at times interspersed with dissections of mated females.
Growth protocol 12 hr light/dark cycle 23C + or - 2C holding and culturing regimes
Extracted molecule total RNA
Extraction protocol TRIzol - chloroform
Label Biotin (Enzo RNA transcript Labeling Kit)
 
Description Three-day-old mated and unmated females were dissected to remove the lower reproductive tract (upper uterus, sperm-storage organs, and accessory glands). Mated females were dissected either immediately following mating (0 hr) or at 3, 6, or 24 hrs following the termination of mating. Tracts of 12-40 females of like category were pooled and total RNA extracted via a TRIzol-based protocol. Processing and labeling of transcript was performed by the Molecular Biology Core Facility at the Medical College of Georgia. Arrays from mated females at the different timepoints were compared to unmated females. This sample is also known as "466.40.cel" and "0hrUGA40.CEL". keywords: reproduction, reproductive tract, accessory gland proteins, sperm
Data processing RMA (Irizarry 2003), probe-based linear model (Chu et al 2002)
 
Submission date Jun 06, 2006
Last update date Nov 03, 2006
Contact name Paul Mack
E-mail(s) [email protected]
Phone 706 542-1578
Fax 706 542-3910
Organization name University of Georgia
Department Genetics
Lab Bender
Street address 1057 Green St.
City Athens
State/province GA
ZIP/Postal code 30602-7223
Country USA
 
Platform ID GPL72
Series (1)
GSE5012 mating response genes

Data table header descriptions
ID_REF
VALUE raw signal - measure of transcript abundance utilizing input from entire probeset for each gene
ABS_CALL Statistical estimation of presence (P), absence (A), or marginal (M) based on entire probeset input
DETECTION P-VALUE p-value indicating significance level of the detection call (note that p-values for "A" calls are > 0.06, "M" calls in range 0.04 - 0.06)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
141200_at 27.9 A 0.611218
141201_at 11.3 A 0.877253
141202_at 179.8 P 0.009283
141203_at 80.6 P 0.002607
141204_at 253.8 P 0.006575
141205_at 56.9 A 0.088557
141206_at 491.4 P 0.000613
141207_at 12.8 A 0.165268
141208_at 420.1 P 0.000762
141209_at 257.3 M 0.042142
141210_at 8.6 A 0.65838
141211_at 95 A 0.088557
141212_at 640.3 P 0.001165
141213_at 399 P 0.000762
141214_at 1224.3 P 0.000491
141215_at 283.3 M 0.042142
141216_at 85.2 A 0.296809
141217_at 349.2 M 0.042142
141218_at 210.1 P 0.000491
141219_at 83.8 P 0.017732

Total number of rows: 14010

Table truncated, full table size 356 Kbytes.




Supplementary data files not provided

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