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Sample GSM1105886 Query DataSets for GSM1105886
Status Public on Aug 17, 2014
Title skin-J1-0W-2
Sample type RNA
 
Source name skin-J1-0W-2
Organism Mus musculus
Characteristics strain: C3H/HeJ
tissue: skin
treatment: jak1i
treatment time: 0
Extracted molecule total RNA
Extraction protocol Qiagen miRNeasy with on-column DNase digestion
Label biotin
Label protocol 3' IVT Express Kit, Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 7G3000.
Data processing The data were analyzed with Bioconductor/R and were RMA normalized.
 
Submission date Mar 26, 2013
Last update date Aug 17, 2014
Contact name Ali Jabbari
Organization name University of Iowa
Street address 200 Hawkins Dr, 40025 PFP
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE45514 Treatment of established mouse AA with topical JAK inhibitors

Data table header descriptions
ID_REF
VALUE RMA normalized log2 (expression values)

Data table
ID_REF VALUE
1415670_at 9.147713292
1415671_at 11.15407734
1415672_at 11.69475501
1415673_at 9.912979629
1415674_a_at 9.809853002
1415675_at 9.277044058
1415676_a_at 11.28678237
1415677_at 9.87119579
1415678_at 10.50493875
1415679_at 11.26650733
1415680_at 8.980637936
1415681_at 10.28725265
1415682_at 8.348414196
1415683_at 11.26588758
1415684_at 8.490932171
1415685_at 7.938076402
1415686_at 10.28482652
1415687_a_at 12.64549364
1415688_at 10.55791959
1415689_s_at 9.132607782

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1105886_J1-0W-2.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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