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Sample GSM1099490 Query DataSets for GSM1099490
Status Public on Apr 16, 2013
Title KTaj-NSM-SHPD_1-2a
Sample type RNA
 
Source name Corpus striatum
Organism Mus musculus
Characteristics region: Corpus striatum
gender: male
strain: CD-1
treatment: haloperidol
dose: 1
Treatment protocol Male CD-1 mice were administered vehicle (0.5% methycellulose twice a day), quetiapine (10 or 100 mg/kg twice a day) or haloperidol (0.32 or 1 mg/kg twice a day) for 28 days.
Extracted molecule total RNA
Extraction protocol Frontal cortex and striatum were dissected and total RNA was extracted using an Rneasy Mini Kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
 
Hybridization protocol The hybridization cocktail was fragmented at 65oC for 30 min
Scan protocol Scanning was performed according to the Affymetrix protocol at the Microarray Core Facility, Johns Hopkins University.
Data processing Data analysis was performed using Partek Genomics Suite (version 6.5).
 
Submission date Mar 15, 2013
Last update date Apr 16, 2013
Contact name Jonathan Pevsner
E-mail(s) [email protected]
Phone (443)923-2686
Organization name Kennedy Krieger Institute
Department Neurology
Street address 707 N. Broadway
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE45229 Unique pharmacological actions of atypical neuroleptic quetiapine: possible role in cell cycle/fate control

Data table header descriptions
ID_REF
VALUE Signal intensity following GC-RMA preprocessing in Partek Genomics Suite.

Data table
ID_REF VALUE
1415670_at 10.7328
1415671_at 12.3597
1415672_at 12.5101
1415673_at 9.56921
1415674_a_at 9.82966
1415675_at 9.08583
1415676_a_at 10.9338
1415677_at 9.95866
1415678_at 11.1878
1415679_at 11.2639
1415680_at 8.42419
1415681_at 9.14946
1415682_at 9.00021
1415683_at 10.58
1415684_at 7.47549
1415685_at 8.38815
1415686_at 10.7873
1415687_a_at 13.586
1415688_at 11.1183
1415689_s_at 8.48297

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM1099490_KTaj-NSM-SHPD_1-2a-MOE430_2.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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