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Sample GSM1099488 Query DataSets for GSM1099488
Status Public on Apr 16, 2013
Title KTaj-NSM-SC-2a
Sample type RNA
 
Source name Corpus striatum
Organism Mus musculus
Characteristics region: Corpus striatum
gender: male
strain: CD-1
treatment: control
dose: vehicle
Treatment protocol Male CD-1 mice were administered vehicle (0.5% methycellulose twice a day), quetiapine (10 or 100 mg/kg twice a day) or haloperidol (0.32 or 1 mg/kg twice a day) for 28 days.
Extracted molecule total RNA
Extraction protocol Frontal cortex and striatum were dissected and total RNA was extracted using an Rneasy Mini Kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
 
Hybridization protocol The hybridization cocktail was fragmented at 65oC for 30 min
Scan protocol Scanning was performed according to the Affymetrix protocol at the Microarray Core Facility, Johns Hopkins University.
Data processing Data analysis was performed using Partek Genomics Suite (version 6.5).
 
Submission date Mar 15, 2013
Last update date Apr 16, 2013
Contact name Jonathan Pevsner
E-mail(s) [email protected]
Phone (443)923-2686
Organization name Kennedy Krieger Institute
Department Neurology
Street address 707 N. Broadway
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE45229 Unique pharmacological actions of atypical neuroleptic quetiapine: possible role in cell cycle/fate control

Data table header descriptions
ID_REF
VALUE Signal intensity following GC-RMA preprocessing in Partek Genomics Suite.

Data table
ID_REF VALUE
1415670_at 10.5984
1415671_at 12.3748
1415672_at 12.1263
1415673_at 9.1456
1415674_a_at 9.67268
1415675_at 9.02343
1415676_a_at 10.8813
1415677_at 9.77534
1415678_at 11.0691
1415679_at 11.2067
1415680_at 7.93541
1415681_at 9.05663
1415682_at 9.02141
1415683_at 10.5321
1415684_at 7.59765
1415685_at 8.41002
1415686_at 10.691
1415687_a_at 13.5308
1415688_at 10.9766
1415689_s_at 8.71889

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM1099488_KTaj-NSM-SC-2a-MOE430_2.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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