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Sample GSM1097 Query DataSets for GSM1097
Status Public on Feb 12, 2002
Title cdc15 200 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 200 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n104
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 254 248 4509 468 84 389 384 372 81 454 -.017 0 -5.791 .4 35 6 53.679 55.376 .019 .018 -.002 1291 45 21 29 71 79 -5.791
2 254 248 3203 394 10 388 384 372 10 382 .665 0 -8.368 .333 35 0 320.3 330.43 .003 .003 .005 1176 45 20 28 80 88 -8.368
3 248 248 1235 388 4 386 384 372 4 376 .474 0 -8.315 .083 26 0 308.75 318.514 .003 .003 .007 1061 45 20 28 89 97 -8.315
4 246 248 10 388 4 384 384 372 4 376 .156 0 -1.367 1 2 0 2.5 2.579 .4 .388 .174 1061 45 20 28 98 106 -1.367
5 246 248 27 488 104 385 384 372 101 473 .591 0 1.901 2 8 8 .26 .268 3.852 3.734 2.45 1061 45 20 28 107 115 1.901
6 248 248 387 3 394 384 372 3 375 -.029 0 .857 0 0 -.041 1061 45 20 28 116 124
7 246 248 42 502 118 393 384 372 114 487 .768 0 1.445 1.849 8 8 .356 .367 2.81 2.723 2.794 1061 45 20 28 125 133 1.445
8 247 248 934 717 341 392 376 364 331 695 .94 0 -1.499 2 8 6 2.739 2.826 .365 .354 .27 1061 45 20 28 134 142 -1.499
9 246 248 1 369 391 376 364 -7 358 -.197 0 2 0 0 -.289 1061 45 20 28 143 151
10 245 248 384 8 380 376 364 8 372 .289 0 1.5 0 0 .397 1061 45 20 28 152 160
11 245 248 1 370 381 376 364 -6 359 .135 0 1.5 0 0 .162 1061 45 20 28 161 169
12 246 248 379 381 384 372 -5 367 .286 0 1.5 0 0 .446 1061 45 20 28 170 178
13 245 248 81 582 198 381 384 372 192 564 .833 0 1.245 1.727 15 15 .409 .422 2.444 2.37 2.635 1061 45 20 28 179 187 1.245
14 251 248 3 385 9 387 376 364 9 373 .538 0 1.54 1 0 2 .333 .344 3 2.908 .799 1061 45 20 28 188 196 1.54
15 251 248 1 385 9 387 376 364 9 373 -.083 0 3.125 2 0 0 .111 .115 9 8.724 -.118 1061 45 20 28 197 205 3.125
16 250 248 8 380 4 386 376 364 4 368 .605 0 -1.045 1.2 2 2 2 2.063 .5 .485 .71 1061 45 20 28 206 214 -1.045
17 250 248 2 390 14 386 376 364 14 378 .351 0 2.762 1.5 0 0 .143 .147 7 6.785 .547 1061 45 20 28 215 223 2.762
18 248 248 381 5 384 376 364 5 369 .097 0 1.5 0 0 .119 1061 45 20 28 224 232
19 246 248 382 6 380 376 364 6 370 .031 0 1 0 0 .035 1061 45 20 28 233 241
20 246 248 6 384 8 380 376 364 8 372 .701 0 .37 1.571 4 2 .75 .774 1.333 1.292 .947 1061 45 20 28 242 250 .37

Total number of rows: 8832

Table truncated, full table size 994 Kbytes.




Supplementary data files not provided
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