|
| Status |
Public on Mar 20, 2014 |
| Title |
E26L2 |
| Sample type |
SRA |
| |
|
| Source name |
plantlets_long day
|
| Organism |
Solanum tuberosum |
| Characteristics |
genotype: E26
treatment: longday for 3 weeks plus 2 d longday
tissue: plantlets
|
| Growth protocol |
potato plantlets were first grown at longday for 3 weeks, and then half of them were transferred to shortday, half of them were kept grown at longday, samples were taken after before transferred and 2days and 5days later at longday and shortday
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
total RNA were extract (Salzman et al., Plant Molecular Biology Reporter, 1999, 17: 11-17)
libraries were constructed according to instruction of the Illumina Gene Expression Sample Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Sample 2
|
| Data processing |
Illumina Casava1.5 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, using BGI DGE Pipeline
Genome_build: http://www.ncbi.nlm.nih.gov/assembly/304118/
Supplementary_files_format_and_content: text files containing count for each read
|
| |
|
| Submission date |
Mar 11, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Jianwei Shan |
| E-mail(s) |
[email protected]
|
| Organization name |
huazhong agricultural university
|
| Department |
college of life of science
|
| Lab |
potato group
|
| Street address |
shizishan street
|
| City |
Wuhan |
| State/province |
Hubei province |
| ZIP/Postal code |
430070 |
| Country |
China |
| |
|
| Platform ID |
GPL16436 |
| Series (1) |
| GSE45008 |
DGE analysis of transcriptome change during photoperiodic regulation of potato tuber formation |
|
| Relations |
| SRA |
SRX247726 |
| BioSample |
SAMN01942198 |
