NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1076 Query DataSets for GSM1076
Status Public on Feb 12, 2002
Title Amino acid + adenine starvation 1 h
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 1 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Strain: DBY#7286 (Mata, ura3-52, GAL2) Growth media: SC Starvation media: YNB-AA + 2% glucose + 20 mg/L uracil (NO ADENINE!) Temperature: 30C Date cells harvested: Sept. 4, 1999 Date of hybridization: Sept. 21, 1999 RNA template: Total RNA, 30 ug Labeling primers: Anchored oligo dT only, 5 ug
ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y14n044c
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL54
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 106 94 147 163 21 165 142 121 18 139 .433 0 -3.036 .3 43 19 7 8.2 .143 .122 .116 1300 112 48 60 104 116 -3.036
2 92 89 29 167 35 133 132 113 30 143 .71 0 .043 1.052 18 21 .829 .971 1.207 1.03 .859 1131 112 48 60 122 134 .043
3 92 89 248 366 230 138 136 116 196 312 .691 0 -.337 1.014 52 53 1.078 1.263 .927 .792 .599 1131 112 48 60 139 151 -.337
4 91 90 64 171 35 139 136 116 30 146 .762 0 -1.099 .815 40 17 1.829 2.142 .547 .467 .58 1131 112 48 60 157 169 -1.099
5 89 88 108 248 115 138 133 114 98 212 .842 0 -.138 1.116 43 41 .939 1.1 1.065 .909 .849 1131 112 48 60 174 186 -.138
6 86 84 16 165 33 134 132 113 28 141 .583 0 .816 1.317 12 16 .485 .568 2.063 1.761 .812 1157 112 47 59 192 204 .816
7 85 83 40 180 48 134 132 113 41 154 .516 0 .035 1.696 35 34 .833 .976 1.2 1.024 .619 1157 112 47 59 209 221 .035
8 85 83 139 9 133 130 111 8 119 .118 -100 1.632 6 7 .165 1157 112 47 59 227 239
9 84 82 134 6 132 128 109 5 114 .161 -100 1.474 5 8 .214 1157 112 47 59 244 256
10 83 81 132 4 132 128 109 3 113 -.042 -100 1.735 8 5 -.06 1175 112 47 59 262 274
11 86 83 2 139 8 135 131 112 7 119 -.05 0 1.772 1.389 10 9 .25 .293 4 3.415 -.09 1148 112 47 59 280 292 1.772
12 92 87 131 150 144 123 -11 112 .04 -100 1.118 5 0 .06 1139 112 47 59 297 309
13 94 90 151 7 151 144 123 6 129 .032 -100 1.5 4 5 .04 1131 112 47 59 315 327
14 90 86 2 139 2 141 137 117 2 119 .029 0 -.228 2 8 8 1 1.171 1 .854 .046 1131 112 47 59 332 344 -.228
15 85 83 129 134 132 113 -3 110 -.069 -100 1.5 7 4 -.102 1131 112 47 59 350 362
16 86 82 1 134 4 133 130 111 3 114 -.178 0 1.772 1.621 5 5 .25 .293 4 3.415 -.275 1131 112 47 59 367 379 1.772
17 85 81 134 4 133 130 111 3 114 .206 -100 2.65 8 9 .346 1157 112 46 58 385 397
18 81 80 1 130 2 132 128 109 2 111 .025 0 .772 2.2 6 4 .5 .586 2 1.707 .037 1157 112 46 58 402 414 .772
19 83 81 126 1 130 125 107 1 108 -.089 -100 1.722 6 5 -.128 1165 112 46 58 420 432
20 84 81 124 131 126 108 -2 106 0 -100 1.96 7 7 -.001 1157 112 46 58 437 449

Total number of rows: 9216

Table truncated, full table size 1111 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap