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Sample GSM104740

Query DataSets for GSM104740

Status

Public on Mar 11, 2007

Title

brownfat_KO2_day3

Sample type

RNA

Source name

brownfat

Organism

Mus musculus

Characteristics

Strain: C57BL/6J
Gender: male
Age: day3
Genotype: KO
Tissue: brown fat

Extracted molecule

total RNA

Extraction protocol

Trizol reagents

Label

biotin

Description

brownfatmaleKO2day3

Data processing

The results were quantified and analyzed using GCOS 1.2 software (Affymetrix, Inc.) using default values (Scaling, Target Signal Intensity = 500; Normalization, All Probe Sets; Parameters, all set at default values).

Submission date

Apr 10, 2006

Last update date

Sep 21, 2006

Contact name

Lola Rahib

E-mail(s)

[email protected]

Phone

310-825-7967

Fax

310-794-5446

Organization name

UCLA

Department

Human Genetics

Lab

Katrina Dipple

Street address

695 Charles E young Drive south Gonda 5335

City

Los Angeles

State/province

ZIP/Postal code

90095

Country

USA

Platform ID

GPL1261

Series (1)

GSE4656

day3 brown fat from wt compared to day3 from Gyk ko

Data table header descriptions
ID_REF
VALUE	Signal (GCOS)
ABS_CALL	Detection
DETECTION P-VALUE	detection p-value

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	459.7	P	0.000754
AFFX-BioB-M_at	876.9	P	0.000169
AFFX-BioB-3_at	339.7	P	0.00006
AFFX-BioC-5_at	1120.2	P	0.00011
AFFX-BioC-3_at	1118.3	P	0.000044
AFFX-BioDn-5_at	1420.6	P	0.000052
AFFX-BioDn-3_at	6461.7	P	0.000095
AFFX-CreX-5_at	16979.3	P	0.000052
AFFX-CreX-3_at	18186.7	P	0.000044
AFFX-DapX-5_at	2100.4	P	0.000052
AFFX-DapX-M_at	3495.8	P	0.000147
AFFX-DapX-3_at	3321	P	0.000052
AFFX-LysX-5_at	210.6	P	0.000081
AFFX-LysX-M_at	406	P	0.004484
AFFX-LysX-3_at	723.9	P	0.000044
AFFX-PheX-5_at	337.5	P	0.000195
AFFX-PheX-M_at	341.9	P	0.000297
AFFX-PheX-3_at	414.4	P	0.000095
AFFX-ThrX-5_at	425.3	P	0.00141
AFFX-ThrX-M_at	632.4	P	0.00007

Total number of rows: 45101

Table truncated, full table size 1219 Kbytes.

Supplementary data files not provided