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Sample GSM104071 Query DataSets for GSM104071
Status Public on Apr 11, 2006
Title Treatment: DHT; time: 24 hrs; repeat: 2; chip B
Sample type RNA
 
Source name LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Organism Homo sapiens
Characteristics In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule total RNA
Label Biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Apr 07, 2006
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1714_H133B_T24.2_Stat Pairs Probe pairs available (PM/MM)
0068_1714_H133B_T24.2_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1714_H133B_T24.2_Stat Pairs 0068_1714_H133B_T24.2_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 732.8 P 0.01667
AFFX-BioB-M_at 20 20 1423.5 P 0.00039
AFFX-BioB-3_at 20 20 629.1 P 0.003212
AFFX-BioC-5_at 20 20 1990.2 P 0.00039
AFFX-BioC-3_at 20 20 1391.2 P 0.00034
AFFX-BioDn-5_at 20 20 1998.2 P 0.000169
AFFX-BioDn-3_at 20 20 11690.5 P 0.000446
AFFX-CreX-5_at 20 20 19167.3 P 0.000044
AFFX-CreX-3_at 20 20 30250.7 P 0.000044
AFFX-DapX-5_at 20 20 97.1 A 0.185131
AFFX-DapX-M_at 20 20 105.9 A 0.39692
AFFX-DapX-3_at 20 20 19.9 A 0.979978
AFFX-LysX-5_at 20 20 29.5 A 0.724854
AFFX-LysX-M_at 20 20 132.6 A 0.440646
AFFX-LysX-3_at 20 20 23.4 A 0.48511
AFFX-PheX-5_at 20 20 30.1 A 0.804734
AFFX-PheX-M_at 20 20 29.1 A 0.843269
AFFX-PheX-3_at 20 20 122.8 A 0.52976
AFFX-ThrX-5_at 20 20 33.8 A 0.876428
AFFX-ThrX-M_at 20 20 116.1 A 0.425962

Total number of rows: 22645

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM104071.CEL.gz 3.5 Mb (ftp)(http) CEL

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