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Sample GSM103556 Query DataSets for GSM103556
Status Public on Apr 11, 2006
Title Treatment: vehicle; time: 6 hrs; repeat: 3; chip B
Sample type RNA
 
Source name LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Organism Homo sapiens
Characteristics In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule total RNA
Label Biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Apr 06, 2006
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1719_H133B_V6.3_Stat Pairs Probe pairs available (PM/MM)
0068_1719_H133B_V6.3_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1719_H133B_V6.3_Stat Pairs 0068_1719_H133B_V6.3_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 769.1 P 0.006187
AFFX-BioB-M_at 20 20 1419.7 P 0.000581
AFFX-BioB-3_at 20 20 921.9 P 0.001593
AFFX-BioC-5_at 20 20 2067.1 P 0.000195
AFFX-BioC-3_at 20 20 1536.7 P 0.000258
AFFX-BioDn-5_at 20 20 1770.5 P 0.000169
AFFX-BioDn-3_at 20 20 12165.3 P 0.000258
AFFX-CreX-5_at 20 20 17718.9 P 0.000044
AFFX-CreX-3_at 20 20 27446.8 P 0.000044
AFFX-DapX-5_at 20 20 32.9 A 0.39692
AFFX-DapX-M_at 20 20 74 A 0.262827
AFFX-DapX-3_at 20 20 16.6 A 0.852061
AFFX-LysX-5_at 20 20 53.3 A 0.455413
AFFX-LysX-M_at 20 20 118.6 A 0.354453
AFFX-LysX-3_at 20 20 62.2 A 0.300606
AFFX-PheX-5_at 20 20 15.7 A 0.876428
AFFX-PheX-M_at 20 20 17.4 A 0.783496
AFFX-PheX-3_at 20 20 60.1 A 0.749204
AFFX-ThrX-5_at 20 20 16 A 0.953519
AFFX-ThrX-M_at 20 20 86.3 A 0.287743

Total number of rows: 22645

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM103556.CEL.gz 3.4 Mb (ftp)(http) CEL

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