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Sample GSM102771 Query DataSets for GSM102771
Status Public on Aug 01, 2006
Title Case L10
Sample type genomic
 
Channel 1
Source name Case L10
Organism Homo sapiens
Characteristics Archival early neoplastic breast lesion (lobular carcinoma in situ; LCIS)
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Pooled female genomic DNA
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Extracted molecule genomic DNA
Label Cy5
 
 
Description Pooled female genomic DNA competitively hybridized against DNA from archival early neoplastic breast lesion case L10 (LCIS)
Data processing none
 
Submission date Mar 31, 2006
Last update date Jun 28, 2006
Contact name Teresa L Mastracci
E-mail(s) [email protected]
Phone 416-586-4800
Organization name Samuel Lunenfeld Research Institute
Department Mount Sinai Hospital
Lab Andrulis Lab
Street address 600 University Ave., room 984
City Toronto
State/province ON
ZIP/Postal code M5G1X5
Country Canada
 
Platform ID GPL2616
Series (1)
GSE4591 High resolution analysis of early lobular neoplastic breast lesions (ALH and LCIS) by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean signal intensity value of the spot for wavelength 595
Spot Mean Intensity (w685) Mean signal intensity value of the spot for wavelength 685
Background Median Intensity (w595) Median background intensity value for the spot in wavelength 595
Background Median Intensity (w685) Median background intensity value for the spot in wavelength 685
Spot Bkgd-subtracted Intensity (w595) Bkgd-subtracted intensity of the spot in wavelength 595
Spot Bkgd-subtracted Intensity (w685) Bkgd-subtracted intensity of the spot in wavelength 685
Spot SNR (w595) Signal to Noise Ratio for wavelength 595
Spot SNR (w685) Signal to Noise Ratio for wavelength 685
Spot Ratio (w595) Ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator
Spot Ratio (w685) Ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
Spot Log2 Ratio (w685) Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
VALUE Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Bkgd-subtracted Intensity (w595) Spot Bkgd-subtracted Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w685) VALUE
1 1069.44 1713.155 1074 1710 -4.55957 3.154785 -0.2010953 0.05832488 0 0 0 0
2 3446.97 3695.42 1085 1721.5 2361.973 1973.925 92.0464 50.3733 0.9909186 1.009127 0.01310728 -0.01316148
3 3349.25 3799.75 1085.5 1750.5 2263.75 2049.25 72.7757 45.3519 0.914802 1.093092 0.1284143 -0.1284685
4 2733.384 3136.071 1099.5 1754 1633.884 1382.071 47.3177 40.3 0.979004 1.021408 0.0305591 -0.03061331
5 3013.505 3283.68 1094.5 1744.5 1919.005 1539.18 61.6239 57.9294 1.032477 0.9685082 -0.04616376 0.04610956
6 3100.126 3404.81 1092 1744 2008.126 1660.806 75.8989 55.9799 1.001303 0.9986607 -0.001933504 0.001879303
7 3325.07 3822.36 1108 1748 2217.068 2074.359 47.1965 59.2775 0.8850924 1.129783 0.1760457 -0.1760999
8 3218.86 3551.66 1123 1740.5 2095.862 1811.16 46.7959 53.4734 0.9582956 1.04348 0.06140309 -0.06145729
9 3421.1 3760.76 1160 1742 2261.098 2018.765 47.988 55.3303 0.9275287 1.078093 0.1084821 -0.1085363
10 3448.82 3771.56 1210 1784 2238.816 1987.56 54.2045 49.8189 0.9328073 1.071993 0.1002948 -0.100349
11 3362.22 3651.36 1238 1793 2124.221 1858.358 36.0207 54.2013 0.9465944 1.056379 0.0791275 -0.0791817
12 3860.01 4089.6 1295 1804 2565.01 2285.604 44.3031 57.2172 0.9293551 1.075975 0.105644 -0.1056982
13 3342.79 3743.25 1354.5 1840.5 1988.294 1902.752 76.9773 45.7704 0.8653504 1.155558 0.2085894 -0.2086436
14 3715.38 3820.63 1339 1854 2376.383 1966.626 72.6207 57.1431 1.000664 0.999299 -0.001011659 0.000957458
15 3814.59 3888.8 1339 1838 2475.589 2050.804 74.4098 68.0031 0.9996501 1.000312 0.000450622 -0.000504823
16 3284.27 3675.36 1331 1831.5 1953.274 1843.858 56.2154 67.0273 0.8772619 1.139868 0.1888663 -0.1889205
17 3248.11 3420.01 1323 1816 1925.106 1604.01 52.8764 47.2662 0.9938967 1.006103 0.008777987 -0.008832188
18 2665.958 2989.116 1300 1812 1365.958 1177.116 30.83603 31.7425 0.9609743 1.040571 0.05737598 -0.05743018
19 2778 3181.28 1294.5 1799 1483.5 1382.281 37.4089 36.4845 0.8887604 1.12512 0.1700792 -0.1701334
20 2408.747 2841.308 1284 1801 1124.747 1040.308 26.36249 31.7903 0.8953376 1.116855 0.1594422 -0.1594964

Total number of rows: 53856

Table truncated, full table size 5610 Kbytes.




Supplementary data files not provided
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