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Sample GSM102765 Query DataSets for GSM102765
Status Public on Aug 01, 2006
Title Case L12
Sample type genomic
 
Channel 1
Source name Case L12
Organism Homo sapiens
Characteristics Archival early neoplastic breast lesion (lobular carcinoma in situ; LCIS)
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Pooled female genomic DNA
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Extracted molecule genomic DNA
Label Cy5
 
 
Description Pooled female genomic DNA competitively hybridized against DNA from archival early neoplastic breast lesion case L12 (LCIS)
Data processing none
 
Submission date Mar 31, 2006
Last update date Jun 28, 2006
Contact name Teresa L Mastracci
E-mail(s) [email protected]
Phone 416-586-4800
Organization name Samuel Lunenfeld Research Institute
Department Mount Sinai Hospital
Lab Andrulis Lab
Street address 600 University Ave., room 984
City Toronto
State/province ON
ZIP/Postal code M5G1X5
Country Canada
 
Platform ID GPL2616
Series (1)
GSE4591 High resolution analysis of early lobular neoplastic breast lesions (ALH and LCIS) by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean signal intensity value of the spot for wavelength 595
Spot Mean Intensity (w685) Mean signal intensity value of the spot for wavelength 685
Background Median Intensity (w595) Median background intensity value for the spot in wavelength 595
Background Median Intensity (w685) Median background intensity value for the spot in wavelength 685
Spot Bkgd-subtracted Intensity (w595) Bkgd-subtracted intensity of the spot in wavelength 595
Spot Bkgd-subtracted Intensity (w685) Bkgd-subtracted intensity of the spot in wavelength 685
Spot SNR (w595) Signal to Noise Ratio for wavelength 595
Spot SNR (w685) Signal to Noise Ratio for wavelength 685
Spot Ratio (w595) Ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator
Spot Ratio (w685) Ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
Spot Log2 Ratio (w685) Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
VALUE Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Bkgd-subtracted Intensity (w595) Spot Bkgd-subtracted Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w685) VALUE
1 932.881 1574.857 942 1573 -9.11902 1.857178 -0.3304843 0.01251947 0 0 0 0
2 2519.442 2383.628 940 1571 1579.442 812.628 57.1932 32.6328 1.163821 0.8592069 -0.2189225 0.2188689
3 2444.5 2367.82 932.5 1553.5 1512 814.32 61.5389 30.62683 1.111811 0.8994 -0.1529652 0.1529116
4 2205.656 2188.729 926.5 1548 1279.156 640.729 53.5183 22.39852 1.195428 0.8364895 -0.2575807 0.2575271
5 2315.225 2207.275 926 1554 1389.225 653.275 58.8865 26.45787 1.273358 0.785296 -0.3486917 0.3486381
6 2530.283 2331.01 932 1565 1598.283 766.01 57.0964 27.07306 1.249377 0.8003692 -0.3212624 0.3212088
7 2519.34 2396.524 898 1552 1621.34 844.524 53.0876 33.7431 1.149572 0.8698564 -0.2011508 0.2010972
8 2380.905 2256.863 907 1551 1473.905 705.863 55.873 22.85259 1.250327 0.7997614 -0.3223586 0.322305
9 2854.68 2517.54 905 1541 1949.68 976.54 89.8305 27.14225 1.195495 0.8364428 -0.2576611 0.2576075
10 2520.979 2379.438 899.5 1539.5 1621.479 839.938 46.1702 30.32541 1.155949 0.8650577 -0.2091316 0.209078
11 2611.033 2394.478 968 1551.5 1643.033 842.978 36.6815 26.64737 1.167089 0.8568004 -0.2229688 0.2229152
12 2814.272 2526.511 991 1567 1823.272 959.511 62.0125 26.09417 1.137826 0.8788365 -0.1863333 0.1862797
13 2943.748 2586.97 992 1557 1951.748 1029.97 59.2143 23.75698 1.13468 0.8812728 -0.1823395 0.1822859
14 2664.417 2351.132 950.5 1550 1713.917 801.132 33.5685 19.3814 1.281033 0.7805911 -0.357361 0.3573074
15 2617.104 2389.792 908 1550 1709.104 839.792 68.5176 25.21703 1.218627 0.8205652 -0.2853101 0.2852565
16 2627 2447.609 896 1547 1731 900.609 67.1655 31.6438 1.150894 0.8688575 -0.2028085 0.2027549
17 2299.729 2212.844 888.5 1539 1411.229 673.844 52.714 22.17324 1.254044 0.7973907 -0.3266413 0.3265877
18 1965.308 2058.755 888.5 1528.5 1076.808 530.255 49.0351 16.92672 1.215984 0.822349 -0.2821774 0.2821238
19 1989.98 2070.755 891 1531.5 1098.98 539.255 46.8959 21.27924 1.220309 0.8194343 -0.2872997 0.2872461
20 1829.352 1994.934 880 1528 949.352 466.934 41.2929 17.26967 1.217435 0.8213684 -0.2838987 0.2838451

Total number of rows: 53856

Table truncated, full table size 5595 Kbytes.




Supplementary data files not provided
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