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Sample GSM102752 Query DataSets for GSM102752
Status Public on Aug 01, 2006
Title Case L1
Sample type genomic
 
Channel 1
Source name Case L1
Organism Homo sapiens
Characteristics Archival early neoplastic breast lesion (lobular carcinoma in situ; LCIS)
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Pooled female genomic DNA
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Extracted molecule genomic DNA
Label Cy5
 
 
Description Pooled female genomic DNA competitively hybridized against DNA from archival early neoplastic breast lesion case L1 (LCIS)
Data processing none
 
Submission date Mar 31, 2006
Last update date Jun 28, 2006
Contact name Teresa L Mastracci
E-mail(s) [email protected]
Phone 416-586-4800
Organization name Samuel Lunenfeld Research Institute
Department Mount Sinai Hospital
Lab Andrulis Lab
Street address 600 University Ave., room 984
City Toronto
State/province ON
ZIP/Postal code M5G1X5
Country Canada
 
Platform ID GPL2616
Series (1)
GSE4591 High resolution analysis of early lobular neoplastic breast lesions (ALH and LCIS) by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean signal intensity value of the spot for wavelength 595
Spot Mean Intensity (w685) Mean signal intensity value of the spot for wavelength 685
Background Median Intensity (w595) Median background intensity value for the spot in wavelength 595
Background Median Intensity (w685) Median background intensity value for the spot in wavelength 685
Spot Bkgd-subtracted Intensity (w595) Bkgd-subtracted intensity of the spot in wavelength 595
Spot Bkgd-subtracted Intensity (w685) Bkgd-subtracted intensity of the spot in wavelength 685
Spot SNR (w595) Signal to Noise Ratio for wavelength 595
Spot SNR (w685) Signal to Noise Ratio for wavelength 685
Spot Ratio (w595) Ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator
Spot Ratio (w685) Ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
Spot Log2 Ratio (w685) Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 685 image used as the numerator
VALUE Base-2 logarithm of the ratio of the bkgd-subtracted intensities of the spot with wavelength 595 image used as the numerator

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Bkgd-subtracted Intensity (w595) Spot Bkgd-subtracted Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w685) VALUE
1 2279.357 1779.417 2268 1771 11.35718 8.41663 0.1762968 0.2605347 2.654965 0.3766313 -1.408775 1.408693
2 2847.374 2610.181 2310 1751 537.374 859.181 14.26218 26.4384 1.230603 0.8125631 -0.2994483 0.299366
3 2716.524 2363.833 2315 1743 401.524 620.833 6.88761 21.16683 1.272515 0.7858007 -0.3477646 0.3476824
4 2780.302 2352.326 2348.5 1761 431.802 591.326 3.98819 12.45643 1.436761 0.6959704 -0.5229023 0.5228201
5 2949.702 2414.428 2422 1810.5 527.702 603.928 5.29993 13.41789 1.719214 0.581628 -0.7818313 0.7817491
6 2909.6 2529.2 2516 1854 393.6 675.2 5.2002 19.19197 1.146962 0.8718185 -0.1979002 0.197818
7 3187 2767.678 2675.5 1953 511.5 814.678 6.78788 14.21751 1.235338 0.809449 -0.304988 0.3049057
8 3269.57 2649.333 2815 2012 454.572 637.333 6.90791 19.66167 1.403337 0.7125465 -0.4889439 0.4888617
9 3469.08 2895.494 2908.5 2062.5 560.582 832.994 8.36159 23.12968 1.324109 0.7551817 -0.4051043 0.4050221
10 3397.14 2864.44 2929 2073 468.143 791.44 6.80557 24.37304 1.163822 0.8591891 -0.2189525 0.2188703
11 3335.22 2811.058 2815.5 2024 519.721 787.058 6.78245 15.64153 1.299241 0.7696362 -0.3777515 0.3776693
12 3336.69 3013.241 2805 1987 531.687 1026.241 -0.1035094 2.797756 1.019372 0.9809398 -0.02776343 0.0276812
13 5798.4 3304.51 7123 2801 -1324.595 503.512 -0.1201154 1.686344 0 0 0 0
14 7401.96 3222.98 7201 2709 200.9648 513.977 0.5279378 2.023302 0.7693131 1.299787 0.378275 -0.3783572
15 6581.34 3177.01 7126 2650 -544.663 527.012 0.2062584 2.169803 0 0 0 0
16 3891.36 2645.083 3640 1975 251.3572 670.083 -0.4530303 1.530656 0.7380553 1.354835 0.438117 -0.4381992
17 4178.33 2795.048 3566.5 1964.5 611.833 830.548 5.63615 20.34492 1.449423 0.6898905 -0.5355607 0.5354785
18 3819.88 2385.718 3632.5 1975 187.3823 410.718 0.8954112 6.11745 0.8976597 1.113944 0.1556771 -0.1557594
19 2945.274 2386.714 2660.5 1856 284.7739 530.714 0.3151951 8.99688 1.055761 0.9471298 -0.07836598 0.07828376
20 2826.282 2250.612 2640 1860 186.2825 390.612 4.5483 13.56908 0.9383243 1.065669 0.09175915 -0.09184137

Total number of rows: 53856

Table truncated, full table size 5638 Kbytes.




Supplementary data files not provided
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