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GEO accession:
Sample GSM100893
Query DataSets for GSM100893
Status
Public on May 26, 2006
Title
Acromegaly case A18
Sample type
RNA
Source name
blood
Organism
Homo sapiens
Characteristics
peripheral blood
Extracted molecule
total RNA
Extraction protocol
Total RNA extracted from whole blood with PAXgene Blood RNA Kit (PreAnalytiX) and concentrated with RNeasy MinElute Cleanup columns (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
peripheral blood
Data processing
Affymetrix GeneChip® Operating Software (GCOS)
Submission date
Mar 16, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570
Series (2)
GSE4488
Expression data from whole blood
GSE6351
Expression data from peripheral blood from healthy and predisposed individuals
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
VALUE
GCOS-calculated Signal intensity
Data table
ID_REF
ABS_CALL
DETECTION P-VALUE
VALUE
AFFX-BioB-5_at
P
0.003212
197.9
AFFX-BioB-M_at
P
0.000052
828.9
AFFX-BioB-3_at
P
0.000662
344.2
AFFX-BioC-5_at
P
0.000052
948.9
AFFX-BioC-3_at
P
0.000044
1332.1
AFFX-BioDn-5_at
P
0.000095
1179.4
AFFX-BioDn-3_at
P
0.000044
4775.1
AFFX-CreX-5_at
P
0.000052
12604.7
AFFX-CreX-3_at
P
0.000044
17999.5
AFFX-DapX-5_at
P
0.000081
534.1
AFFX-DapX-M_at
P
0.000662
1311.5
AFFX-DapX-3_at
P
0.00006
1457.3
AFFX-LysX-5_at
P
0.00034
60.8
AFFX-LysX-M_at
P
0.004017
167.1
AFFX-LysX-3_at
P
0.000044
303.3
AFFX-PheX-5_at
P
0.002556
93.5
AFFX-PheX-M_at
P
0.000972
121.8
AFFX-PheX-3_at
P
0.000662
195.2
AFFX-ThrX-5_at
P
0.000662
123.9
AFFX-ThrX-M_at
P
0.00141
173.1
Total number of rows:
54675
Table truncated, full table size
1411 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM100893.CEL.gz
7.8 Mb
(ftp)
(http)
CEL
GSM100893.EXP.gz
504 b
(ftp)
(http)
EXP
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