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Series GSE99453

Query DataSets for GSE99453

Status

Public on May 31, 2017

Title

The identified enhancer RNAs across human cell and tissue types

Sample organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis

Summary

In order to identity enhancer RNA across human cell and tissue types, histone modifications and RNA-Seq data were used to calculate candidate enhancers and classify enhancer RNA

Overall design

Identity enhancer regions based on H3k27ac, H3k4me3,H3k4me1 ChIP-Seq data across 50 different human tissues and cell lines, corresponding RNA-Seq data were used to detect enhancer RNA

This series includes data from 281 re-analyzed samples from GSE16256 (127), GSE16368 (69), GSE17312 (44), GSE18927 (15) and GSE19465 (26).

Contributor(s)

Shu W, Liu F, Ren C

Citation(s)

29138457

Submission date

May 30, 2017

Last update date

Aug 29, 2018

Contact name

Wenjie Shu

E-mail(s)

[email protected]

Organization name

Beijing Institute of Radiation Medicine

Street address

Taiping Road 27

City

Beijing

ZIP/Postal code

100850

Country

China

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BioProject

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE99453_Samples_and_protocols.xls.gz	36.8 Kb	(ftp)(http)	XLS
GSE99453_bed_files.tar.gz	563.7 Kb	(ftp)(http)	TAR
Processed data are available on Series record