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Series GSE9683 Query DataSets for GSE9683
Status Public on Nov 15, 2008
Title Tomato wild type, vector control and transgenic lines expressing InsP 5-ptase: mature fruits, root tips, and leaves
Organism Solanum lycopersicum
Experiment type Expression profiling by array
Summary To reduce the level of major second messenger inositol-1,4,5-triphosphate (InsP3), we generated transgenic tomato plants (cv. Micro-Tom) that are expressing InsP 5-ptase gene. To understand effects of transgene (InsP 5-ptase) on gene expression we carried out microarray analysis from different parts of transgenic and control (wild type, empty vector control) tomato plants
Objectives for this study included the identification of genes that were up or down-regulated at the transcriptional level in transgenic tomato plants expressing InsP 5-ptase gene
Keywords: genetic modification
 
Overall design Ripe fruits of wild type, vector control and two transgenic tomato lines expressing InsP 5-ptase gene were selected for RNA extraction and hybridization on Affymetrix microarrays
First two leaves of 10 day old light grown in vitro seedlings of wild type, vector control and two transgenic tomato lines expressing InsP 5-ptase gene were selected for RNA extraction and hybridization on Affymetrix microarrays
10 day old etiolated root tips of wild type, vector control and two transgenic tomato lines expressing InsP 5-ptase gene were selected for RNA extraction and hybridization on Affymetrix microarrays
 
Contributor(s) Khodakovskaya M, Sederoff HW
Citation(s) 20040061
Submission date Nov 26, 2007
Last update date Dec 24, 2015
Contact name Mariya Khodakovskaya
E-mail(s) [email protected]
Phone 919-515-2225
Fax 919-515-3436
Organization name North Carolina State University
Department Plant Biology
Lab Plant Sensory Genomics Group
Street address 4218 Gardner Hall
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platforms (1)
GPL4741 [Tomato] Affymetrix Tomato Genome Array
Samples (40)
GSM244701 Fruits-Wild type biological rep.1
GSM244702 Fruits-Wild type biological rep.2
GSM244703 Fruits-Wild type biological rep.3
Relations
BioProject PRJNA103575

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9683_RAW.tar 39.4 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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