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| Status |
Public on May 10, 2017 |
| Title |
Temperature induced alternative splicing is affected in sdg8 and sdg26. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Plants developed a plasticity to environmental conditions, such as temperature, that allows their adaptation. A change in ambient temperature leads to changes in the transcriptome in plants, such as the production of different splicing isoforms. Here we study temperature induced alternative splicing events in Arabidopsis thaliana wild-type and two epigenetic mutants, sdg8-2 and sdg26-1 using an RNA-seq approach.
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| Overall design |
We generate 3 biological replicates for each genotype (wild-type, sdg8-2 and sdg26-1) at each condition (16°C and 25°C day 1), for a total of 18 samples.
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| Contributor(s) |
Pajoro A, Edouard S, Immink R |
| Citation(s) |
28566089 |
| |
| Submission date |
Aug 07, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Alice Pajoro |
| E-mail(s) |
[email protected]
|
| Organization name |
Wageningen University
|
| Street address |
Droevendaalsesteeg 1
|
| City |
Wageningen |
| ZIP/Postal code |
6708lt |
| Country |
Netherlands |
| |
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| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (18)
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| This SubSeries is part of SuperSeries: |
| GSE85282 |
H3K36me3 histone modification and regulation of ambient temperature-induced alternative splicing in Arabidopsis |
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| Relations |
| BioProject |
PRJNA338072 |
| SRA |
SRP081055 |
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