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Series GSE83959

Query DataSets for GSE83959

Status

Public on Aug 31, 2016

Title

Drosophila TDP-43 RNA-binding Protein Facilitates Association of Sister Chromatid Cohesion Proteins with Genes, Enhancers, and Polycomb Response Elements

Organism

Drosophila melanogaster

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

Binding of sister chromatid cohesion and RNA-bindng proteins to chromosomes was measured by ChIP-seq

Overall design

Comparison of binding of sister chromatid cohesion and RNA-binding proteins in untreated (Mock) cells and cells RNAi depleted for sister chromatid cohesion and RNA-binding proteins

Contributor(s)

Dorsett D, Swain A

Citation(s)

NIH grant(s)

Grant ID	Grant title	Affiliation	Name
R01 GM108714	Cohesin Dynamics and Transcriptional Enhancer Function	SAINT LOUIS UNIVERSITY	Dorsett
R01 GM108872	Cohesin Polycomb Interactions in Gene Regulation	SAINT LOUIS UNIVERSITY	Dorsett

Submission date

Jul 01, 2016

Last update date

May 15, 2019

Contact name

Dale Dorsett

Organization name

Saint Louis University School of Medicine

Department

Biochemistry and Molecular Biology

Street address

1100 South Grand Boulevard

City

Saint Louis

State/province

MO

ZIP/Postal code

63104

Country

USA

Platforms (1)

Ion Torrent Proton (Drosophila melanogaster)

Samples (53)

More...

GSM2224492	Input Replicate 1
GSM2224493	Input Replicate 2
GSM2224494	Ser5P Pol II Mock Replicate 1

GSM2224495	Ser5P Pol II Mock Replicate 2
GSM2224496	Nipped-B Mock Replicate 1
GSM2224497	Nipped-B Mock Replicate 2
GSM2224498	SA Mock Replicate 1
GSM2224499	SA Mock Replicate 2
GSM2224500	SA Mock Replicate 3
GSM2224501	TBPH Mock Replicate 1
GSM2224502	TBPH Mock Replicate 2
GSM2224503	TBPH Mock Replicate 3
GSM2224504	TBPH Mock Replicate 4
GSM2224505	Lark Mock Replicate 1
GSM2224506	Lark Mock Replicate 2
GSM2224507	Lark Mock Replicate 3
GSM2224508	Lark Mock Replicate 4
GSM2224509	Lark Mock Replicate 5
GSM2224510	Nipped-B TBPH RNAi Replicate 1
GSM2224511	Nipped-B TBPH RNAi Replicate 2
GSM2224512	SA TBPH RNAi Replicate 1
GSM2224513	SA TBPH RNAi Replicate 2
GSM2224514	Nipped-B Lark RNAi Replicate 1
GSM2224515	Nipped-B Lark RNAi Replicate 2
GSM2224516	SA Lark RNAi Replicate 1
GSM2224517	SA Lark RNAi Replicate 2
GSM2224518	TBPH Nipped-B RNAi Replicate 1
GSM2224519	TBPH Nipped-B RNAi Replicate 2
GSM2224520	TBPH Nipped-B RNAi Replicate 3
GSM2224521	TBPH Nipped-B RNAi Replicate 4
GSM2224522	Lark Nipped-B RNAi Replicate 1
GSM2224523	Lark Nipped-B RNAi Replicate 2
GSM2224524	Ser5P triptolide 1 hour
GSM2224525	Ser5P triptolide 2 hour
GSM2224526	Ser5P triptolide 4 hour
GSM2224527	Nipped-B triptolide 1 hour
GSM2224528	Nipped-B triptolide 2 hour
GSM2224529	Nipped-B triptolide 4 hour
GSM2224530	TBPH triptolide 1 hour
GSM2224531	TBPH triptolide 2 hour
GSM2224532	TBPH triptolide 4 hour
GSM2224533	Lark triptolide 1 hour Technical Replicate 1
GSM2224534	Lark triptolide 1 hour Technical Replicate 2
GSM2224535	Lark triptolide 2 hour Technical Replicate 1
GSM2224536	Lark triptolide 2 hour Technical Replicate 2
GSM2224537	Lark triptolide 4 hour Technical Replicate 1
GSM2224538	Lark triptolide 4 hour Technical Replicate 2
GSM2224539	Nipped-B 3rd Instar Wing Disc Replicate 1
GSM2224540	Nipped-B 3rd Instar Wing Disc Replicate 2
GSM2224541	TBPH 3rd Instar Wing Disc Replicate 1
GSM2224542	TBPH 3rd Instar Wing Disc Replicate 2
GSM2224543	Lark 3rd Instar Wing Disc Replicate 1
GSM2224544	Lark 3rd Instar Wing Disc Replicate 2

Relations

BioProject

SRA

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE83959_Lark.BG3.Mock.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Lark.BG3.iNipB.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Lark.BG3.trp.10uM.1hr.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Lark.BG3.trp.10uM.2hr.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Lark.BG3.trp.10uM.4hr.ave.log.enrichment.sgr.gz	27.2 Mb	(ftp)(http)	SGR
GSE83959_Lark.wing.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.BG3.Mock.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.BG3.iLark.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.BG3.iTBPH.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.BG3.trp.10uM.1hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.BG3.trp.10uM.2hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.BG3.trp.10uM.4hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_NipB.wing.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_SA.BG3.Mock.ave.log.enrichment.sgr.gz	27.2 Mb	(ftp)(http)	SGR
GSE83959_SA.BG3.iLark.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_SA.BG3.iTBPH.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Ser5P.PolII.BG3.Mock.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Ser5P.PolII.BG3.trp.10uM.1hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Ser5P.PolII.BG3.trp.10uM.2hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_Ser5P.PolII.BG3.trp.10uM.4hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_TBPH.BG3.Mock.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_TBPH.BG3.iNipB.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_TBPH.BG3.trp.10uM.1hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_TBPH.BG3.trp.10uM.2hr.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_TBPH.BG3.trp.10uM.4hr.Iog.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
GSE83959_TBPH.wing.ave.log.enrichment.sgr.gz	27.3 Mb	(ftp)(http)	SGR
SRA Run Selector
Processed data are available on Series record
Raw data are available in SRA

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