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Series GSE82058 Query DataSets for GSE82058
Status Public on Jul 25, 2016
Title Transcriptomics response to miR-644 overexpression in three breast cancer cell lines
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The goal of the study is to investigate the effect of microRNA-644 overexpression by chemical mimics on gene expression in breast cancer cell lines. To this purpose control and microRNA-644 mimics are used to transfect MDA-MB-231 cells, SK-BR-3 cells, and MCF-7 cells respectively. Transcriptomics profiling was performed with Illumina HumanHT-12 V4.0 BeadChip microarray.
 
Overall design Three cell lines are treated with scramble microRNA mimic (control herein) and microRNA-644 mimic (miR-644 herein), with two replicates per condition. mRNA expression is compared between miR-644 and control treatment within each cell line, respectively.
 
Contributor(s) Uhlmann S, Zhang JD, Sahin Ö
Citation(s) 27409664
Submission date May 31, 2016
Last update date Aug 13, 2018
Contact name Jitao David Zhang
E-mail(s) [email protected]
Phone +41616886251
Organization name F. Hoffmann-La Roche
Department Roche Pharmaceutical Research and Early Development, Roche Innovation Center Basel
Lab Pharmaceutical Sciences
Street address Grenzacherstrasse 124
City Basel
ZIP/Postal code 4070
Country Switzerland
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (12)
GSM2182734 MDA-MB-231 control (replicate 1)
GSM2182735 MDA-MB-231 control (replicate 2)
GSM2182736 MDA-MB-231 miR-644 (replicate 1)
Relations
BioProject PRJNA323851

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE82058_RAW.tar 51.3 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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