|
| Status |
Public on Jan 08, 2016 |
| Title |
Expression profile of Pseudomonas aeruginosa ΔgcsR PAO1 using RNA-Seq |
| Organism |
Pseudomonas aeruginosa |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The TyrR-like enhancer-binding protein GcsR (or PA2449) was shown to regulate the expression of genes required for glycine metabolism. In order to define the regulon of GcsR we compared the transcriptome of a gcsR deletion mutant of P. aeruginosa PAO1 with that of the wild-type using RNA-Seq.
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| |
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| Overall design |
Strains were grown under glycine rich conditions (peptone broth) and their transcriptomes were compared using RNA-Seq.
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| |
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| Contributor(s) |
Sarwar Z, Nomura CT |
| Citation(s) |
27303730 |
| |
| Submission date |
Jan 04, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Christopher T Nomura |
| E-mail(s) |
[email protected]
|
| Phone |
315-470-6854
|
| Organization name |
SUNY-ESF
|
| Department |
Chemistry
|
| Lab |
336 Jahn
|
| Street address |
1 Forestry Dr.
|
| City |
Syracuse |
| State/province |
New York |
| ZIP/Postal code |
13210 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21297 |
Illumina NextSeq 500 (Pseudomonas aeruginosa) |
|
| Samples (4)
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|
| Relations |
| BioProject |
PRJNA307608 |
| SRA |
SRP068065 |
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