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Series GSE72401 Query DataSets for GSE72401
Status Public on Mar 17, 2017
Title Motivated cocaine seeking lead to transgenerational epigenetic inheritance of vulnerability to cocaine addiction
Organism Rattus norvegicus
Experiment type Methylation profiling by high throughput sequencing
Summary Familial transmission and high heritability of liability for drug abuse has been demonstrated by large scale epidemiological and twin studies, but the role of pre-existing susceptibility to addiction is still not clear. Our data show that F1 and F2 offspring sired by rats with high motivation for drug reinforcement and drug intake during cocaine self-administration maintained their ancestor’s addict-like behavior. This paternal transmission of drug addiction is an acquired trait that is dependent on cocaine induced high motivation in F0. Reduced representation bisulfite sequencing of F0 and F1 sperm DNA reveal a few persistent epigenetic changes in genes that critically regulate early development and morphogenesis. These epigenetic traits may underlie alterations in the neurological basis that lead to the transmission of cocaine motivation. Our results reveal the epigenetic transgenerational inheritance of drug craving and provide a potential etiology in cocaine abuse vulnerability.
 
Overall design In order to investigate the transgenerational inheritance of acquired cocaine motivation traits by DNA methylation, we performed reduced-representation bisulfite sequencing (RRBS) to assess the DNA methylation-enriched sites in sperms of Saline-F0, Addict-like F0, Non-Addict-like F0, Addict-like F1, Non-Addict-like F1 rats. Sequencing was performed with sperms from three to four individual rats of each group at 20M-read scale, respectively.
 
Contributor(s) Yan B, Le Q, Li Y, Yu X, Song H, Ma D, Wu F, Ma L
Citation(s) 28556835
Submission date Aug 26, 2015
Last update date May 15, 2019
Contact name Qiumin Le
E-mail(s) [email protected]
Organization name Fudan University
Street address 130 Dong'an Road
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (2)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (18)
GSM1861854 F0_Saline_1
GSM1861855 F0_Saline_2
GSM1861856 F0_Saline_3
Relations
BioProject PRJNA293970
SRA SRP062864

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72401_RAW.tar 143.7 Mb (http)(custom) TAR (of TXT)
GSE72401_fpkm_value_post_F1.txt.gz 238.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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