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| Status |
Public on Jan 02, 2016 |
| Title |
CTCF ChIP-seq in human monocytic THP-1 cells with replicates (4) |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
ChIP-seq for the insulator protein CTCF in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)
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| Overall design |
THP-1 cells were treated for 24 h with 100 nM 1,25(OH)2D3 before ChIP assay
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| Contributor(s) |
Seuter S, Neme A, Carlberg C |
| Citation(s) |
26715761, 27569350, 33753848, 35325193 |
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| Submission date |
Jun 17, 2015 |
| Last update date |
Apr 27, 2022 |
| Contact name |
Carsten Carlberg |
| E-mail(s) |
[email protected]
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| Organization name |
University of Eastern Finland
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| Department |
Institute of Biomedicine
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| Street address |
Yliopistonranta 1D
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| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
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| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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| Samples (9)
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| GSM2144250 |
THP-1, CTCF ChIP-seq, 24 h EtOH replicate 2 |
| GSM2144251 |
THP-1, CTCF ChIP-seq, 24 h 1,25(OH)2D3 replicate 2 |
| GSM2144252 |
THP-1, CTCF ChIP-seq, 24 h EtOH replicate 3 |
| GSM2144253 |
THP-1, CTCF ChIP-seq, 24 h 1,25(OH)2D3 replicate 3 |
| GSM2144254 |
THP-1, CTCF ChIP-seq, 24 h EtOH replicate 4 |
| GSM2144255 |
THP-1, CTCF ChIP-seq, 24 h 1,25(OH)2D3 replicate 4 |
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| This SubSeries is part of SuperSeries: |
| GSE69303 |
1,25(OH)2D3 time course in THP-1 cells |
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| Relations |
| BioProject |
PRJNA287278 |
| SRA |
SRP059606 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE69962_RAW.tar |
2.0 Gb |
(http)(custom) |
TAR (of TDF) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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