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| Status |
Public on Jan 02, 2016 |
| Title |
RNA-seq 1,25(OH)2D3 time course in THP-1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
gene expression profiling by RNA-seq in THP-1 cells treated with 1,25(OH)2D3 for 2.5-24 h
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| Overall design |
three independent experiments of 1,25(OH)2D3 time course in THP-1 cells
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| Contributor(s) |
Seuter S, Neme A, Carlberg C |
| Citation(s) |
26715761, 33753848 |
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| Submission date |
May 27, 2015 |
| Last update date |
Apr 06, 2021 |
| Contact name |
Carsten Carlberg |
| E-mail(s) |
[email protected]
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| Organization name |
University of Eastern Finland
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| Department |
Institute of Biomedicine
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| Street address |
Yliopistonranta 1D
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| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
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| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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| Samples (18)
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| GSM1697099 |
RNA-seq at 4 h 1,25(OH)2D3, replicate A |
| GSM1697100 |
RNA-seq at 24 h EtOH, replicate A |
| GSM1697101 |
RNA-seq at 24 h 1,25(OH)2D3, replicate A |
| GSM1697102 |
RNA-seq at 2.5 h EtOH, replicate B |
| GSM1697103 |
RNA-seq at 2.5 h 1,25(OH)2D3, replicate B |
| GSM1697104 |
RNA-seq at 4 h EtOH, replicate B |
| GSM1697105 |
RNA-seq at 4 h 1,25(OH)2D3, replicate B |
| GSM1697106 |
RNA-seq at 24 h EtOH, replicate B |
| GSM1697107 |
RNA-seq at 24 h 1,25(OH)2D3, replicate B |
| GSM1697108 |
RNA-seq at 2.5 h EtOH, replicate C |
| GSM1697109 |
RNA-seq at 2.5 h 1,25(OH)2D3, replicate C |
| GSM1697110 |
RNA-seq at 4 h EtOH, replicate C |
| GSM1697111 |
RNA-seq at 4 h 1,25(OH)2D3, replicate C |
| GSM1697112 |
RNA-seq at 24 h EtOH, replicate C |
| GSM1697113 |
RNA-seq at 24 h 1,25(OH)2D3, replicate C |
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| This SubSeries is part of SuperSeries: |
| GSE69303 |
1,25(OH)2D3 time course in THP-1 cells |
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| Relations |
| BioProject |
PRJNA285092 |
| SRA |
SRP058771 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE69284_RAW.tar |
906.8 Mb |
(http)(custom) |
TAR (of TDF) |
| GSE69284_gene_exp_24h.diff.gz |
822.9 Kb |
(ftp)(http) |
DIFF |
| GSE69284_gene_exp_2_5h.diff.gz |
791.6 Kb |
(ftp)(http) |
DIFF |
| GSE69284_gene_exp_4h.diff.gz |
800.9 Kb |
(ftp)(http) |
DIFF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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