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Series GSE64278 Query DataSets for GSE64278
Status Public on Jan 01, 2015
Title Gonadal transcriptome analysis of wild contaminated female European eels during artificial gonad maturation
Platform organisms Anguilla anguilla; Anguilla rostrata
Sample organism Anguilla anguilla
Experiment type Expression profiling by array
Summary Since the early 1980s, the population of European eels (Anguilla anguilla) has dramatically declined. Nowadays, the European eel is listed on the red list of threatened species (IUCN Red List) and is considered as critically endangered of extinction. Pollution is one of the explanations of the collapse of this species. Among their possible effects, pollutants gradually accumulated in eels during their somatic growth phase (yellow eel stage) would be remobilized during their reproductive migration leading to potential toxic events in gonads. The aim of this study was to investigate the potential effect of pollution on the gonad development of wild female silver eels. Female silver eels from two sites with differing contamination levels were artificially matured. Transcriptomic analyses by means of a 1000 candidate gene cDNA microarray were performed on gonads after 11 weeks of maturation. The results showed that the transcription levels of several genes that were associated to the gonadosomatic index (GSI) were involved in mitotic cell division but also in spermatogenesis. Genes associated to pollution were mainly involved in the mechanisms of protection against oxidative stress, in DNA repair, in the purinergic signaling pathway and in steroidogenesis, suggesting an impairment of gonad development in eels from the polluted site. This was in agreement with the fact that eels from the reference site showed a higher gonad growth in comparison to contaminated fish.
 
Overall design Comparison between wild european eels from a clean (Certes) and contaminated site (Gironde) were performed using a common reference (named in raw data reference, colored with cyanine 5) on microarray.
 
Contributor(s) Baillon L, Pierron F, Oses J, Bureau du Colombier S, Caron A, Normandeau E, Lambert P, Couture P, Labadie P, Budzinski H, Dufour S, Bernatchez L, Baudrimont M
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Submission date Dec 17, 2014
Last update date Jan 01, 2015
Contact name lucie baillon
Organization name université de Bordeaux UMR ePOC
Street address place du docteur Peyneau
City Arcachon
ZIP/Postal code 33120
Country France
 
Platforms (1)
GPL19017 American and European eel microarray
Samples (15)
GSM1567831 Certes - A609
GSM1567832 Certes - A610
GSM1567833 Certes - A611
Relations
BioProject PRJNA270623

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64278_Raw_data_European_eel_gonad_experiment.txt.gz 340.4 Kb (ftp)(http) TXT
Processed data are available on Series record

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