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Series GSE63561 Query DataSets for GSE63561
Status Public on Nov 21, 2014
Title Prenatal alcohol exposure alters steady-state and activated gene expression in the adult rat brain
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Background: Prenatal alcohol exposure (PAE) is associated with alterations in numerous physiological systems, including the stress and immune systems. We have previously shown that PAE increases the course and severity of arthritis in an adjuvant-induced arthritis (AA) model. While the molecular mechanisms underlying these effects are not fully known, changes in neural gene expression are emerging as important factors in the etiology of PAE effects. As the prefrontal cortex (PFC) and hippocampus (HPC) play key roles in neuroimmune function, PAE-induced alterations to their transcriptome may underlie abnormal steady-state functions and responses to immune challenge. The current study examined brains from adult PAE and control females from our recent AA study to determine whether PAE causes long-term alterations in gene expression and whether these mediate the altered severity and course of arthritis in PAE females Methods: Adult females from PAE, pair-fed [PF], and ad libitum-fed control [C]) groups were injected with either saline or complete Freund’s adjuvant. Animals were terminated at the peak of inflammation or during resolution (days 16 and 39 post-injection, respectively); cohorts of saline-injected PAE, PF and C females were terminated in parallel. Gene expression was analyzed in the PFC and HPC using whole genome mRNA expression microarrays. Results: Significant changes in gene expression in both the PFC and HPC were found in PAE compared to controls in response to ethanol exposure alone (saline-injected females), including genes involved in neurodevelopment, apoptosis, and energy metabolism. Moreover, in response to inflammation (adjuvant-injected females), PAE animals showed unique expression patterns, while failing to exhibit the activation of genes and regulators involved in the immune response observed in control and pair-fed animals. Conclusions: These results support the hypothesis that PAE affects neuroimmune function at the level of gene expression, demonstrating long-term effects of PAE on the CNS response under steady-state conditions and following an inflammatory insult. Key words: prenatal alcohol exposure (PAE), ethanol, inflammation, arthritis, gene expression, rat.
 
Overall design 192 samples, including 20 hybridization replicates
 
Contributor(s) Stepien KA, Lussier AA, Neumann SM, Pavlidis P, Kobor MS, Weinberg J
Citation(s) 25684047
Submission date Nov 21, 2014
Last update date Feb 20, 2015
Contact name Michael S. Kobor
Organization name Centre for Molecular Medicine and Therapeutics / University of British Columbia
Department Medical Genetics
Lab Kobor
Street address 950 West 28th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4H4
Country Canada
 
Platforms (1)
GPL6101 Illumina ratRef-12 v1.0 expression beadchip
Samples (192)
GSM1552477 hipp_pairfed_saline_day16_65_rep4
GSM1552478 hipp_ethanol_saline_day16_46_rep3
GSM1552479 hipp_control_adjuvant_day16_51_rep1
Relations
BioProject PRJNA268213

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63561_RAW.tar 2.8 Mb (http)(custom) TAR
GSE63561_non-normalized_data.txt.gz 34.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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