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Series GSE58779 Query DataSets for GSE58779
Status Public on Dec 01, 2014
Title Characterization of small RNAs and their targets in soybean (Glycine max)
Organism Glycine max
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Small RNAs, including microRNAs and their targets, as well as phased secondary siRNAs, were characterized in the soybean genome by deep sequencing of small RNA libraries from a wide range of tissues. The mRNA targets of many of these small RNAs were also validated from many of the same tissues using PARE (Parallel Analysis of RNA Ends) libraries.
 
Overall design Small RNA profiling was done by Illumina TruSeq sample preparation followed by high-throughput sequencing using an Illumina HiSeq 2500 at the Delaware Biotechnology Institute. PARE analysis used library construction approaches described in the journal Methods (PubMed ID: 23810899).
Web link https://mpss.danforthcenter.org/dbs/index.php?SITE=soy_sRNA_USB
 
Contributor(s) Meyers BC, Arikit S
Citation(s) 25465409
Submission date Jun 24, 2014
Last update date Apr 29, 2020
Contact name Blake C. Meyers
E-mail(s) [email protected]
Phone 314-587-1422
Organization name Donald Danforth Plant Science Center
Lab Meyers lab
Street address 975 N Warson Road
City St. Louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (78)
GSM1419316 Anthers, rep 1
GSM1419317 Anthers, rep 2
GSM1419318 Ovaries, rep 1
Relations
BioProject PRJNA253492
SRA SRP043543

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58779_RAW.tar 2.2 Gb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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