|
| Status |
Public on Jan 05, 2015 |
| Title |
Comparative genomics of Staphylococcus aureus and the application of a “pan-genome” for assigning RNA-Seq transcript reads from divergent strains and in vivo human nasal samples |
| Organism |
Staphylococcus aureus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
in vitro comparison between two MRSA grown in rich (BHI) and poor media (SNM), compared with the nasal metatranscriptome reads of S. aureus.
|
| |
|
| Overall design |
Global expression profile of two MRSA strains of S.aureus harvested in two different growth phases and compared with a metatranscriptome nose sample of a S. aureus carrier.
|
| |
|
| Contributor(s) |
Chaves-Moreno D, Wos-Oxley ML, Jáuregui R, Medina E, Pieper DH, Oxley AP |
| Citation(s) |
26717500 |
| |
| Submission date |
Mar 27, 2014 |
| Last update date |
Jul 26, 2019 |
| Contact name |
Diego Chaves-Moreno |
| Organization name |
Helmholtz Centrum for Infection Research
|
| Department |
Department of Medical Microbiology (MMIK)
|
| Lab |
Research Group Microbial Interactions and Processes (MINP)
|
| Street address |
inhoffenstrasse 7
|
| City |
Braunschweig |
| ZIP/Postal code |
38124 |
| Country |
Germany |
| |
|
| Platforms (2) |
| GPL16057 |
Illumina Genome Analyzer IIx (Staphylococcus aureus) |
| GPL18481 |
Illumina MiSeq (Staphylococcus aureus) |
|
| Samples (7)
|
|
| Relations |
| BioProject |
PRJNA242859 |
| SRA |
SRP040657 |
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