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Series GSE55533 Query DataSets for GSE55533
Status Public on May 19, 2014
Title Reciprocal leukemia-stroma VCAM-1/VLA-4-dependent activation 1 of NF-κB mediates chemoresistance
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Bone marrow (BM) mesenchymal stromal cells (BM-MSC) upregulate their NF-κB signaling to protect leukemia cells from chemotherapy-induced apoptosis.
 
Overall design To elucidate molecular mechanisms by which leukemia-stroma interactions within the BM microenvironment could confer chemoresistance to leukemia cells, we used genome-wide gene expression profiling (GEP) to examine human normal BM-MSC that had been co-cultured with the pre-B ALL REH cells and then separated by flow cytometry (FACS). GEP results for co-cultured cells of each type were compared to GEP results for cells of the corresponding type cultured alone, and taken through the same FACS purification procedure, to identify changes in gene expression profiles caused by co-culture.
 
Contributor(s) Jacamo R, Ma W, Wang Z, Davis RE, Andreeff M
Citation(s) 24599548
Submission date Mar 03, 2014
Last update date Aug 13, 2018
Contact name Wencai Ma
Organization name MD Anderson Cancer Center
Street address 7455 Fannin st
City Houston
ZIP/Postal code 77054
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (12)
GSM1338747 MSC alone_21% Oxygen_s1
GSM1338748 MSC coculture_21% Oxygen_s1
GSM1338749 MSC alone_21% Oxygen_s2
Relations
BioProject PRJNA239887

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55533_RAW.tar 26.2 Mb (http)(custom) TAR
GSE55533_non_normalized.txt.gz 3.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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