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Series GSE5414 Query DataSets for GSE5414
Status Public on Aug 03, 2006
Title Gene Expression data of Arctic Ground Squirrel during the multiple stages of hibernation
Platform organisms Urocitellus parryii; Ictidomys tridecemlineatus; Callospermophilus lateralis
Sample organism Urocitellus parryii
Experiment type Expression profiling by array
Summary Differential gene expression in a wide range of tissues including brown adipose tissue (BAT), liver, heart, hypothalamus, and skeletal muscle in hibernating arctic ground squirrels during multiple stages in torpor-arousal cycles compared to non-hibernating (post-reproductive) animals with illumina beadarray technology.
Keywords: Multiple stage comparison
 
Overall design Arctic Ground Squirrels were sampled at four stages of hibernation: early arousal denoted as EA (1-2 hrs after Tb cross 30¡C, n=4), late arousal denoted as LA (7-8 hrs after Tb cross 30¡C, n=4), early torpor denoted as ET (10-20% of torpid episode, n=4) and late torpor denoted as LT (80-90% of torpid episode, n=5), where Tb is the body temperature and the length of torpid episode is estimated from the previous torpor bout. Post-reproductive animals denoted as PR (n=7) were used as non-hibernating control. Five tissue types: brown adipose tissue (BAT), liver, heart, hypothalamus, and skeletal muscle were hybridized on two customized 700-gene beadarray platforms: 1A and 2A on 96-sample Illumina ArrayMatrix. The data of a pilot study involving brown adipose tissue (BAT), liver, and skeletal muscle on 16-sample Illumina BeadChip denoted as 16chip are also included in this series.
 
Contributor(s) Yan J, Kohl F, Barnes BM, Marr TG
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Submission date Jul 30, 2006
Last update date Jan 17, 2013
Contact name Jun Yan
E-mail(s) [email protected]
Phone 907-474-6384
Fax 907-450-8601
Organization name University of Alaska Fairbanks
Department Institute of Arctic Biology
Street address 311 Irving Building
City Fairbanks
State/province AK
ZIP/Postal code 99775
Country USA
 
Platforms (2)
GPL4041 UAF Arctic Ground Squirrel Illumina BeadArray 1A
GPL4042 UAF Arctic Ground Squirrel Illumina BeadArray 2A
Samples (288)
GSM124010 Arctic ground squirrel liver at early arousal (EA) animal rep1 on 1A array
GSM124011 Arctic ground squirrel liver at early torpor (ET) animal rep1 on 1A array
GSM124012 Arctic ground squirrel liver at post-reproductive (PR) animal rep1 on 1A array
Relations
BioProject PRJNA96231

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MINiML formatted family file(s) MINiMLHelp
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Supplementary data files not provided

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